Protein Info for OKGIIK_15325 in Rhodanobacter sp. FW510-T8

Name: xerC
Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 PF02899: Phage_int_SAM_1" amino acids 7 to 90 (84 residues), 62.8 bits, see alignment E=3e-21 TIGR02224: tyrosine recombinase XerC" amino acids 8 to 293 (286 residues), 335.8 bits, see alignment E=1.2e-104 PF00589: Phage_integrase" amino acids 112 to 279 (168 residues), 159.1 bits, see alignment E=9.2e-51

Best Hits

Swiss-Prot: 59% identical to XERC_XYLFT: Tyrosine recombinase XerC (xerC) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 62% identity to xal:XALc_2575)

Predicted SEED Role

"Tyrosine recombinase XerC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>OKGIIK_15325 tyrosine recombinase XerC (Rhodanobacter sp. FW510-T8)
MTPAQQVERWLARLADERHASPHTVAGYRRDLAKLLRFMQEQRLAAFDALDANRMRTFVA
GEHRAGLAPKSLQRLLSSCRSLFRQLGREGALASDPLLGVRGPKVRRKLPQVLDVDEATA
LVETGGDGALATRDRAMLELFYSSGLRLSELCGLRWLALDLDEGEVRVLGKGGKTRIVPV
GRHAVAALRALGAEHGMPADGPVFPGRGGAPINPRTVQLRMNKLALQQGIPKHIHPHLLR
HTFASHMLESSGDLRAVQELLGHADIATTQIYTHLDFQHLARVYDAAHPRAKRKP