Protein Info for OKGIIK_15315 in Rhodanobacter sp. FW510-T8

Name: hslU
Annotation: ATP-dependent protease ATPase subunit HslU

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 446 TIGR00390: ATP-dependent protease HslVU, ATPase subunit" amino acids 4 to 446 (443 residues), 664.6 bits, see alignment E=3.7e-204 PF07728: AAA_5" amino acids 52 to 88 (37 residues), 24.5 bits, see alignment 7.3e-09 PF00004: AAA" amino acids 53 to 102 (50 residues), 29.5 bits, see alignment 2.8e-10 amino acids 244 to 335 (92 residues), 27.8 bits, see alignment E=9e-10 PF07724: AAA_2" amino acids 191 to 332 (142 residues), 88.2 bits, see alignment E=1.9e-28

Best Hits

Swiss-Prot: 68% identical to HSLU_SHEFN: ATP-dependent protease ATPase subunit HslU (hslU) from Shewanella frigidimarina (strain NCIMB 400)

KEGG orthology group: K03667, ATP-dependent HslUV protease ATP-binding subunit HslU (inferred from 70% identity to nwa:Nwat_2187)

Predicted SEED Role

"ATP-dependent hsl protease ATP-binding subunit HslU" in subsystem Proteasome bacterial or Proteolysis in bacteria, ATP-dependent

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (446 amino acids)

>OKGIIK_15315 ATP-dependent protease ATPase subunit HslU (Rhodanobacter sp. FW510-T8)
MSELTPREIVNELDHYIIGQHDAKRAVAVALRSRWRRMQLAPQMRNEITPKNILMIGPTG
VGKTEIARRLATLANAPFVKVEATKFTEVGYVGKDVESIIRDLADVAYKLTREQAAKRVR
SQAEDRAEDRILDALLPRRQTPGDWSHDHAAAPAIDSDTRQKLRKQLREGALDEREIELD
FAMNVGVEIMSPPGMEEMGAQLRQMFQNLGGAKTQSRKLAIKLARPLLIDEEAGKLLNDE
EVRAQAVEAAEQNGIVFIDEIDKVAQRSDYGHSGVSREGVQRDLLPLVEGSTVSTKYGPI
KTDHMLFIASGAFSLAKPSDLIPELQGRLPIRVELSALSVDDFKRILREPHNALTKQYVA
LLGTEGVTIEFTDSGIDRLAEVAFQVNERTENIGARRLHTVMERLLEKISFEAADKSGEK
YLIDAEQVDINLRKLAQDEDLSRYIL