Protein Info for OKGIIK_15280 in Rhodanobacter sp. FW510-T8

Name: yidC
Annotation: membrane protein insertase YidC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 580 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 388 to 408 (21 residues), see Phobius details amino acids 455 to 477 (23 residues), see Phobius details amino acids 497 to 519 (23 residues), see Phobius details amino acids 532 to 553 (22 residues), see Phobius details TIGR03593: membrane protein insertase, YidC/Oxa1 family, N-terminal domain" amino acids 4 to 385 (382 residues), 314.4 bits, see alignment E=1.5e-97 PF14849: YidC_periplas" amino acids 84 to 377 (294 residues), 264.8 bits, see alignment E=1.5e-82 TIGR03592: membrane protein insertase, YidC/Oxa1 family" amino acids 387 to 566 (180 residues), 221.2 bits, see alignment E=1.2e-69 PF02096: 60KD_IMP" amino acids 388 to 566 (179 residues), 196.9 bits, see alignment E=2.4e-62

Best Hits

Predicted SEED Role

"Inner membrane protein translocase component YidC, long form"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (580 amino acids)

>OKGIIK_15280 membrane protein insertase YidC (Rhodanobacter sp. FW510-T8)
MNQTRTFLMFALLAVAYLLFLAWEKDYAPNPPPAVAASAAAGTAATPADGSVPGAIPGAT
ASAAATPAIAGDSGRAAPATAQLVTVTTDVLKLAVDTRGGSLVHADLLAYPQAPRTHKAP
NPPPTVLLSSDDAHYAVAQNGLVSSSDSASADQPNHLALFHAEKTAYTLADGQDELKVDL
TWQDAAGLKVTKTYTFKRGSYVIGVSQRIDNGGATAWQGNAYQQLLRVEPPKAGSWLKNY
TDPETRSFQGAAWYTGEKFEKLPFKNFAEPKDRLDADIKGGWAAMLKLYFVTAWIPPAGQ
TEHYVTQTLNPDSAHPRYLIRTVGPALSVAPGQSLTSQSRLYVGPNVQGTLDAIAPGLDL
TIDYGMFKIIAVPMHWVLSQFHAITKNWGVAIILLVLLIKGLSWKLTAMQYRSSARMRKL
QPRVQALKERYGDDKQKMQMAMMELYKKEKVNPMGGCLPVLITLPVFYGLFFVLEYSLEL
RHAPFLWIPDLSAPDPFYILPVIYALVMLGTQWLNPVAAGMDPTQAKMMKVMPLLFTVMF
AFFPAGLCLYYAVNGIVGLGQQWWITHHVDREDAAKPQAA