Protein Info for OKGIIK_15255 in Rhodanobacter sp. FW510-T8

Name: recF
Annotation: DNA replication/repair protein RecF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 TIGR00611: DNA replication and repair protein RecF" amino acids 7 to 346 (340 residues), 272.6 bits, see alignment E=2.8e-85 PF02463: SMC_N" amino acids 8 to 338 (331 residues), 72.5 bits, see alignment E=5.5e-24 PF13476: AAA_23" amino acids 10 to 50 (41 residues), 30.2 bits, see alignment 1e-10

Best Hits

Predicted SEED Role

"DNA recombination and repair protein RecF" in subsystem DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (364 amino acids)

>OKGIIK_15255 DNA replication/repair protein RecF (Rhodanobacter sp. FW510-T8)
MGTAPVRLEQLRVRGLRCLGEVGVALDPALNVFTGANGAGKTSVLEAVFLLSHARSFRSG
AKEALLQRGASQLSIFAELRHADGRVGRVGLGRDGVRWEAKLDGANVAIGQLVRECAVVC
FEPGSHALIAGAAEERRRYLDWGVFHVEHEFLAGWRRYQRALKQRNSLLRSATPGDDDLF
APWEIELAQSAQQIDQQRGAYLDLLKPKLLASIGGLLPELGALELRYRRGWPEEQDLARQ
LREQRGRDLARGHTTLGAHRADWSIAFEHAPLREHLSRGQEKLTALACMLAQAELYAEHR
GEWPIVCLDDLASELDQAHQAAVVAQLAAARAQVLLTGTELPQALQGLPARVFHVEQGEL
TRLL