Protein Info for OKGIIK_15200 in Rhodanobacter sp. FW510-T8
Annotation: Glutamate synthase subunit alpha
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K00284, glutamate synthase (ferredoxin) [EC: 1.4.7.1] (inferred from 74% identity to aav:Aave_1008)Predicted SEED Role
"Glutamate synthase [NADPH] large chain (EC 1.4.1.13)" in subsystem Ammonia assimilation or Glutamine, Glutamate, Aspartate and Asparagine Biosynthesis (EC 1.4.1.13)
MetaCyc Pathways
- nitrogen remobilization from senescing leaves (7/8 steps found)
- ammonia assimilation cycle III (3/3 steps found)
- superpathway of ammonia assimilation (plants) (3/3 steps found)
- L-glutamate biosynthesis I (2/2 steps found)
- ammonia assimilation cycle II (2/2 steps found)
- L-glutamate biosynthesis V (1/1 steps found)
- L-glutamine degradation I (1/1 steps found)
- L-glutamine degradation II (1/1 steps found)
- L-citrulline biosynthesis (6/8 steps found)
- L-glutamate and L-glutamine biosynthesis (5/7 steps found)
- superpathway of L-citrulline metabolism (8/12 steps found)
- GABA shunt II (1/4 steps found)
- L-asparagine biosynthesis III (tRNA-dependent) (1/4 steps found)
- glutaminyl-tRNAgln biosynthesis via transamidation (1/4 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid
- Glutamate metabolism
- Nitrogen metabolism
Isozymes
Compare fitness of predicted isozymes for: 1.4.1.13, 1.4.7.1
Use Curated BLAST to search for 1.4.1.13 or 1.4.7.1
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (1567 amino acids)
>OKGIIK_15200 Glutamate synthase subunit alpha (Rhodanobacter sp. FW510-T8) MAQPRAQGLYSPSNEHDACGVGFVAHIKGRKSHDIVQQGLLILRNLDHRGAVGADPLMGD GAGILIQIPDLLYREDMAQQGVQLPPPGEYGVGMIFLPKEHASRLACEQELERTVRAEGQ VVLGWRDVRVDAGMPMSPAVKATEPVVRQLFIGRGPDVMVPDALERKLYVIRKTSSHAIR ALGLKHSKEYFVPSMSSRTVVYKGLLLAGQVGQYYLDLADPRTVSALALVHQRFSTNTFP AWELAHPYRMIAHNGEINTVKGNVNWINARTGAISSPVLGDDLAKLWPLIYPGQSDTASF DNCLELLTMAGYPLSHAMMMMIPEAWERHTLMDDNRRAFYEYHAAMMEPWDGPAAIAFTD GRQVGATLDRNGLRPARYLITDDDLVILASEAGVLPVAESRIVKKWRLQPGRMLLIDMEA GRIIDDKELKDQLANARPYKQWIEHIRIKLDALPEPRAEARAVDSLLDRQQAFGYTQEDL KFQLLPMAQAGEEAIGAMGNDSPMAVLSERSKSLYNYFRQLFAQVTNPSIDPIREQLVMS LVSFIGPKPNLLDINNINPPLRLEVAQPVLDFAEMAKIRKIGRYSKSKFRSFELDITYPA AWGKAGIEARLASLCAQATDAIRQGHNILIVSDRRSDRERVAIPALLATSAVHQHLVTKG LRTSTGLVVETGSAREVHHFALLAGYGAEAIHPYLAMEVLAQHFAAGSDGIGADKAIRNY IKAIDKGLQKVMSKMGISTYMSYTGAQIFEAVGLSRELVDKYFTGTTSNIEGIGLFEVAE EALRLHAAAYGDDPVLADALDVGGEYAWRVRGEEHMWTPDMVAKLQHATRANNAQTYQEY SQLVNDQSRRLMTLRGLFEFRLDPAAAIPLDEVEPAAEIVKRFVTGAMSLGSISTEAHTT LAIAMNRIGGKSNTGEGGEDEARYQGELRGVAIKQGDTVAGLLGEAHIERDLELEAGDSL RSRIKQVASGRFGVTAAYLVSADQIQIKISQGAKPGEGGQLPGHKVSDYIARLRFSVPGV GLISPPPHHDIYSIEDLAQLIHDLKNCNPQASISVKLVSEVGVGTVAAGVAKAKADHVVI AGHDGGTGASPWSSIKHAGTPWELGLAETQQTLVLNRLRGRIRVQADGQMKTGRDVVIGA LLGADEFGFATAPLVVEGCIMMRKCHLNTCPTGVATQDPVLRRKFSGKPEHVVNYFFFVA EEARRIMAQLGIRRFDELVGRADLLDIRQGIAHWKTRGLDFARVFYRPEVPAEVARRHVS AQDHGLDQAGKALDHTLIEKARPALERGERTSFIVSVRNVNRTVGTMLSGEVARRHGHAG LPDDSIHIQMDGTAGQSFGAFLARGITLDLVGEANDYVGKGLSGGRIVVRSPNDFHGFGP EHIIAGNTVLYGATEGEAYFNGVAGERFAVRNSGATAVVEGVGDHGCEYMTGGTVVLLGE TGRNFAAGMSGGVAYVYDPELHFQPRCNLSMVGLEPLLSGVEQELRVPRALWHPPTRGGA GETDEAILRRLLEAHFRYTGSFRARAILHDWINARTHFVKVMPHEYKRALAQPPRETATA STEKATA