Protein Info for OKGIIK_15000 in Rhodanobacter sp. FW510-T8

Annotation: Phospholipid-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 PF01161: PBP" amino acids 14 to 199 (186 residues), 127.8 bits, see alignment E=1.9e-41 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family" amino acids 30 to 198 (169 residues), 86.8 bits, see alignment E=6.2e-29

Best Hits

KEGG orthology group: K06910, (no description) (inferred from 59% identity to cti:RALTA_A0448)

Predicted SEED Role

"Phospholipid-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>OKGIIK_15000 Phospholipid-binding protein (Rhodanobacter sp. FW510-T8)
MQLRSDNFENGRTIPAEFAFGRRADPVALSDNRSPHLAWKDAPPATRSFVLTCIDADVPS
RGDDVNQAGRTVPADLPRVEFVHWLMANIPAECGELAAGSCSDGITARGKREPFGPPGSV
QGVNDYTGWFAGDADMGGDYLGYDGPCPPWNDSLLHHYRFKVHALNVAALPLAGGFSLAE
LRAAMAGHVLAEAELVGTYSLNPVLAG