Protein Info for OKGIIK_14485 in Rhodanobacter sp. FW510-T8

Annotation: TonB dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1044 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details PF07715: Plug" amino acids 78 to 194 (117 residues), 64.2 bits, see alignment E=1.5e-21 PF00593: TonB_dep_Rec" amino acids 465 to 1009 (545 residues), 118.3 bits, see alignment E=8.6e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1044 amino acids)

>OKGIIK_14485 TonB dependent receptor (Rhodanobacter sp. FW510-T8)
MIVAGLMATAAAAHAADLTSDSLAAAAAGGTVPQAADAAQPPAAAGSVAPPVEQPKVKRL
EAVTVTGSLIQVHSRSEESSSPLATIGIDQIAAAGQVSLDSAIGRMPQFAAAQGQSEVGD
VQGATGFQGGQSYADLRGLGAERTLVLLDGQRLVPTNPNGAVDLNLIPMALLENVDVITG
GASATYGSDAVAGVVNFRLRQDFQGIQLSAQTGGSTKGGGQENSASVLMGSKFADNKGNA
VIDLEYNQRDAITGADRTFFSDPLNFNRAVPRAPEGIFSAGELGGNIPVSAVNAILAGYP
GTTPIAGTGNYGGYIGLNSNGTLFTTRAPGNCVQNYQGPVGKIPGLAISPNCTTIKNYLG
KYFFVQVPSHRLNLFSKVTYKINEGLEAYAQINFMRSTATDNNGPAFAGPGKFVYVPQNN
PFVTGNAALMSLLNARTATTAGGSPSTGPLEMEAWLTGLGPRIESFRYNNYQLTAGLNGW
FGWSSWKWNAFASYGQTNFNNDQQNNVNLPALENVLYGTANYVGSNGNNCVGYAWNPLGN
HQLSPGCLAYVTGTAHNNMVLTQDYFQGTVSGDLGDLWAGTVEAAFGVDYRADRFNYQAD
SALNPAFNVMPSPIPPDIISPSYDLIGSTGGSMNVGEVFGELSVPLLSEKPFVKNLSLDL
GERYSHYDLFGGENTWKASLRWQVDDALMFRGGFNRAIRAPSLQELYNPTVQAQDSINGD
PCEVGSLQRSGPNAGQVAALCQAQGVPASVYPSFTYGLNSANGIITGNTGLQPEKSDTYT
LGWVLTPHFEAPMARDIGMSLDYYHTSIKGAIAGVTLDTVLQNCYNANNSNPIYSESNAF
CQRITRDPNTGAITLGRESSENIGSYVTTGVDMEAHWGFPLHDLGLPLGGRVKLQTFLSY
VHSLTISGVPGVAASNYAGSIADTSTALAADGSSISDLSHPRWKANTTFGYSIGPVSAAL
HWRYISGMADLMGGAGSGYPGVPAYNYFDLDAHWQATHNIMLTAGVTNLTDKAPPRIAGA
PLLTDAATYDVVGRTYFIGFKAKI