Protein Info for OKGIIK_14210 in Rhodanobacter sp. FW510-T8

Annotation: ATP-dependent DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1496 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF00270: DEAD" amino acids 24 to 210 (187 residues), 101.1 bits, see alignment E=1.2e-32 PF04851: ResIII" amino acids 37 to 209 (173 residues), 26.6 bits, see alignment E=1e-09 PF00271: Helicase_C" amino acids 303 to 405 (103 residues), 71.1 bits, see alignment 1.9e-23 PF08494: DEAD_assoc" amino acids 668 to 870 (203 residues), 168.9 bits, see alignment E=2.4e-53

Best Hits

Predicted SEED Role

"Lhr-like helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1496 amino acids)

>OKGIIK_14210 ATP-dependent DNA helicase (Rhodanobacter sp. FW510-T8)
MSSPLADFHPAVAAWFRGAFAAPTAAQAAAWPSIRAGQHTLVAAPTGSGKTLTAFLAAID
ALVREGVAHGGVLADATTVVYVSPLKALSNDIHVNLEAPLEGIRAELEQLGLPDVAIRTA
VRTGDTPQAERNLLRKLPPHILVTTPESLYVLLGSASGRAMLSGVRTVIVDEIHAIAGSK
RGAHLALSLERLESLCRRRLLRIGLSATQKPIEMVADFLVGTGEHPALAPPPAGRGRLGG
GKAFDLLEAKSTPPQPSPASRGGSTATIIDVGHSRPRDLAIEVPPVPLEAVMSNDGWALV
YDRLAQLVRAHRTTLVFVNTRRMAERAARHLSERLGKEHVAAHHGSLAKELRLDAEQRLK
RGELQVLVATASLELGIDIGEVDLVCQLGSPRSIAAFLQRAGRSGHSIDGTPKARLFPAT
RDDLIECTALLDCVRRGELDALVMPPQPLDVLAQQIVAEVACAEWGEDALYALVRRAHPY
RDLARGEFDAVVRMLAEGFTTRQGPRAAYIHRDAVNRQLRPRRSARLTALTSGGTIPDTA
DYKVVLEPQAIIVGTVNEDFAVESMAGDIFQLGNASYRIQRVERDRLRVEDAHGAPPSIP
FWLGEAPGRSDELSLGVSRLREEISAQLDVGGVPAAMAWLCEQLGLDEAAAQQLVDYLAR
AQAALGVLPSQRTLVLERFFDESGGTQLVIHTPWGSRINRAWGLALRKRFCRQFNFELQA
AATEDAIVLSLSTSHSFPLEEVAHYLHSNTAEHVLIQALLDAPLFPARWRWNAVTALALP
RFTGGKKTPPPLQRMKSEDLLAAVFPDQVACLENIVGEREVPDHPLVNQTLHDCLREAMD
VDGLLAILRRLEAGDIAIVARDLTAPSPLAAEVLNAAPYAFLDDAPLEERRTQAVQTRRW
NSADGADDLGRLDPDAIAGVREEAWPRVRDADEMHEALTLLGCVTADEVAANPGWNEWLR
ALARAARATLLTVGAHPVRDGSSSPDERASRTGCAPTAIWTSAEQLPLWQALHPDAAMQP
PIDAPAEYAAQSWTREDALLELVRHRLGGLGPVTVDELAQPINVDAGEAEQALLRLQSEG
YVMQGRFTANAADTEWCERHLLARIHRYTIGRLRREIEPVSRRALMRFLFDWQHVSAATR
LSGPDALAATLAQLEGYEAAAGAWETELLPARIDDYSIHWLDELCRAGRIGWARLRTGSG
GGGGPVRSTPIVLLPRREMAVWTSAAGEPQEALLSSRAQAVADALQEHGALFFDELLDLA
HLLRTELEDALGELVAVGRISADSFAGLRALLLPAAKRDGGRHRRLRRHQLSGIEDAGRW
ALARTAATGNGKAEPDAIEHIARTLLRRYGVVFWKLLEREAPWLPPWRELLRVYHRLEAR
GEIRGGRFVEGLVGEQFALPEAIAPLRAVRSRADDGELVCLSGCDPLNLVGTVLAGDKVP
ALAGTRVLYRDGAPIAALVGGKPAALIELSAADTQLAKHALLRYPPSLPETRAAAH