Protein Info for OKGIIK_14175 in Rhodanobacter sp. FW510-T8

Annotation: Sensor protein QseC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details transmembrane" amino acids 164 to 187 (24 residues), see Phobius details PF08521: 2CSK_N" amino acids 23 to 164 (142 residues), 90.9 bits, see alignment E=1.2e-29 PF00512: HisKA" amino acids 242 to 304 (63 residues), 39.9 bits, see alignment E=5.2e-14 PF02518: HATPase_c" amino acids 352 to 461 (110 residues), 88 bits, see alignment E=8.9e-29

Best Hits

KEGG orthology group: K07649, two-component system, OmpR family, sensor histidine kinase TctE [EC: 2.7.13.3] (inferred from 38% identity to bte:BTH_I0641)

Predicted SEED Role

No annotation

Isozymes

Compare fitness of predicted isozymes for: 2.7.13.3

Use Curated BLAST to search for 2.7.13.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>OKGIIK_14175 Sensor protein QseC (Rhodanobacter sp. FW510-T8)
MKRSSPSRPSLRRRLLVFLLIPMAVLLLLDALLSYGVALTYANRVHDRDLGGDALTLAKM
LGKDPQADRLTPQARFLLEYDPVGRSYFSVSSSRHGLLAGDGRLARPVAASAPDATPTLY
DTRLDGHTLRAADVRVTPSDDPGDSLTIVVAETLRDRHEQAREILLLAVVMQTFLIACVL
SLVWFGVSRGLRVLDPLTARLATRPDELAPIDGPDVPQEIQPLTRTIDALFGRLRGMLAL
HDRFIADAAHQLRTPLAGLSLHVDRALADPRPETLSDAFDHIQRLTRRAARTSSQLLALT
RAQAAPADTGDYRLLDLARLIPEAVSQRVYEAIRAGVDLGYEGRQEPLYILGDAAGLQDL
LDNLIDNAVRYAGRGSVITVRLQAREGGGATLSVEDNGPGVPTELLPRLSERFFRVGGSQ
EQGSGLGLAIVRRIAGRHHAEVVFRNGQERGLRVDVHFPPPPPALASPS