Protein Info for OKGIIK_14070 in Rhodanobacter sp. FW510-T8

Annotation: Efflux transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 40 to 350 (311 residues), 135.7 bits, see alignment E=8.8e-44 PF16576: HlyD_D23" amino acids 50 to 259 (210 residues), 47.1 bits, see alignment E=2.8e-16 PF13437: HlyD_3" amino acids 167 to 261 (95 residues), 30.1 bits, see alignment E=1.1e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (362 amino acids)

>OKGIIK_14070 Efflux transporter periplasmic adaptor subunit (Rhodanobacter sp. FW510-T8)
MKRTLMARAVALGLMTLLAACAKGGGDDEHAGEAKGVALVTTAMPVQRSFHDSVAAWGSA
AADPHAARSISLAHGGQVVALKVSAGQTVGRGQPLLVVTPDPAARSAYQQAQSAATLAQG
ELQRTEQLAAQHLATQSQVAIARKALADAQSALAAQQALGGGAAEETVAAPDDGVVTAVP
VTLGDRFAANAPLLGFMPAHALIAALGVQPDAGTRLRAGMPVSVHGVYGDGATFTGKLVM
VGRAVDPQTHLLPVQAELPAGADATLVAGAAIEAAIQSGDYTAWAVPRAAVLHDEQGDYL
FQFDHGKAHRVDVQLRQPAGDSVGVLGKLDAQLPVIVQGAYELDDGAAVRQGDRQADGER
KP