Protein Info for OKGIIK_13480 in Rhodanobacter sp. FW510-T8

Annotation: YhhN family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 259 transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 56 to 75 (20 residues), see Phobius details amino acids 87 to 104 (18 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details amino acids 198 to 217 (20 residues), see Phobius details amino acids 223 to 243 (21 residues), see Phobius details PF07947: YhhN" amino acids 58 to 246 (189 residues), 142.7 bits, see alignment E=5.4e-46

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (259 amino acids)

>OKGIIK_13480 YhhN family (Rhodanobacter sp. FW510-T8)
MIGRVSSTVPCMVATASRSLLPAGMRRLAFATSCAAAAAIAGALLATGGAGQGWLWLHWI
GKPLATALIFVLAWRARPAASPRYRRRVLAGIACSLAGDVLLMLPGDLFVPGLLAFLCGH
LCFIAAFLDDSRFGARPWLLLASLGYGAANLALLWDAIGAPLRAPVIVYVAVLAAMAGQA
LGRARVFARRGDVQAPAARLAALGALAFMLSDSVLAWNRFHGAIPWSSLWVLSAYYLALW
WIARSVRRVDTASKAGAAK