Protein Info for OKGIIK_13180 in Rhodanobacter sp. FW510-T8

Name: eRG3
Annotation: Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 21 to 42 (22 residues), see Phobius details amino acids 49 to 70 (22 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details PF04116: FA_hydroxylase" amino acids 58 to 186 (129 residues), 66.1 bits, see alignment E=2.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (195 amino acids)

>OKGIIK_13180 Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily (Rhodanobacter sp. FW510-T8)
MKRNPWRIFVDAVMRMSATRANYWSELGVDGVLCVLLLVLGWQRHAGGPLTALLAIGLGL
FAFSFIEYFFHRWMFHTRVPLFAQGHDQHHARPLGYDSLPFFLPPAVLLALAGVFVLLMP
TGFALLLAGAITFGYIVYGLSHFIIHHVRFRQPLLRRWAAAHHVHHYHPESNFGVTTPLW
DVLLGTRYVRQPRSR