Protein Info for OKGIIK_13080 in Rhodanobacter sp. FW510-T8

Annotation: Hydroxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 443 transmembrane" amino acids 349 to 366 (18 residues), see Phobius details amino acids 396 to 415 (20 residues), see Phobius details PF01494: FAD_binding_3" amino acids 9 to 340 (332 residues), 80.1 bits, see alignment E=6.8e-26 PF00890: FAD_binding_2" amino acids 10 to 44 (35 residues), 23.5 bits, see alignment 1e-08 PF12831: FAD_oxidored" amino acids 10 to 174 (165 residues), 41.2 bits, see alignment E=5e-14 PF04820: Trp_halogenase" amino acids 10 to 84 (75 residues), 34.2 bits, see alignment E=5e-12 amino acids 102 to 354 (253 residues), 58.7 bits, see alignment E=1.7e-19 PF13450: NAD_binding_8" amino acids 13 to 46 (34 residues), 30.7 bits, see alignment 1.1e-10

Best Hits

KEGG orthology group: None (inferred from 54% identity to xom:XOO_4071)

Predicted SEED Role

"FIG022199: FAD-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (443 amino acids)

>OKGIIK_13080 Hydroxylase (Rhodanobacter sp. FW510-T8)
MAEPEVEQCDVAVIGGGPGGSTAAALLARRGHKVIALEKAHHPRFHIGESLLPMNLPVFE
RLGVLDKVRELGVFKAGADFEADNARGYNVYAFARAIGPSPPHAYQVWRQDFDRMLYEHA
REAGAEAREGHEVLRVEQRGPRESWLDVRTDDGRDYAIRARYVVDASGRDALLATKRKLR
RRNAQHQSAAIFGHFRGADRRPGEDAGNVSIYRFEHGWMWMIPLPDGVMSVGAVCQPEYL
KQRRGRTVEFLLDTLKLNPALWQRVGRAELIGGAVHVTGNYSYDSTCMGGPGWVLVGDAF
AFLDPVFSSGVYLAMSGAEQAAAVVDQALREPQREAALLRKLERRLRAGLARFAFFVYRF
NGPVMRQMLRSPRNTWQLEQAVISMLAGDLFDTPKVLWRLQLFKLVYAIIALRDWRRGRA
ERRHRLAQARTPFTGGNTPLDKA