Protein Info for OKGIIK_12760 in Rhodanobacter sp. FW510-T8

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 952 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF07715: Plug" amino acids 68 to 173 (106 residues), 93 bits, see alignment E=1.6e-30 PF00593: TonB_dep_Rec" amino acids 356 to 914 (559 residues), 98.7 bits, see alignment E=7.3e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (952 amino acids)

>OKGIIK_12760 TonB-dependent receptor (Rhodanobacter sp. FW510-T8)
MKLGVKKLSSAVRLGLSLGAVIAVGVSTSAFAQDTSGQQNNQPADQQNAKTLQTVVVTGS
RIRRVDLETANPVTTVTREEIKSSGKLTAGDLLQELPAVAGAATNPNVNNGGGDGASTVS
LRGLGSQRTLILVNGHRVARNDINAIPASMIDRIEVLKDGASATYGSDAIGGVVNFILRK
NFQGLELSANVGESDHNDGTRRGFSALFGTAGDKGSITAGIDYNKFDEISSAKRDFSKYA
TYLSSGSVYHGGSSRNPNGYVSLPTGPVTLAHPVNGKTSTSDYRPYNSKTDSFNYQAVNL
ITTPQERFNAFALATYQVTDNLQAHLDFFYNKTSSHFAIAPLPFDAKSDGVVVSAQNYYN
PFGINFGPGGRTFRSRFTTLGQRMEDFATQTGQVDAGLKGSVGDTSWQWSADLNYGHVGQ
DTVQHGYVYYNGLKSALGPSFLDPVSGKVTCGTPTAPVSGCTPLNIFNVNDPQTVSTLGN
YAAAPFGHTLITTRRAEVNANGDLFSLPAGTVSLAVGADYEKDYQNTQVDYIARTSGTGG
TCFISQEACATPLAGSFNVKEVYGELFVPLLTGLPGIKSLNLTLGSRYSSYSSAGSRTSN
KVALEWRPVDDLLVRGTMEGVFRAPTISDLYAGAAGSAPQLTDPCIGYTGGHAAACANVP
TNGSFKGSGLGQTTAVVSGSVAAGYNLKPEYGKSFDFGAVYDPHFIPGLSLSADYWRVHL
NDTITPLGVQNTMSICYANGSSPFCSFIHRDDTGQILFINSPTVNLGTLNTSGIDFTGKY
KIPHFDVAGTNIGDFALSLNTTYLIKYDNDTAPGQAGDVINHLAGMYNNGYGNYTRWRGV
GMLNWSTGPWSATWKMRYFGALNVGSRNTTETFSADQSLPNVVLRVPTMIYNDFAVAYNI
ARWNTTLNAGVDNVFDKQPPLMYQNNVLNANTDVNTYDTIGRYFFAGVTVKF