Protein Info for OKGIIK_12515 in Rhodanobacter sp. FW510-T8

Annotation: 3-oxoacyl-ACP reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF08659: KR" amino acids 14 to 173 (160 residues), 25.4 bits, see alignment E=1.8e-09 PF00106: adh_short" amino acids 14 to 202 (189 residues), 138.8 bits, see alignment E=2.4e-44 PF13561: adh_short_C2" amino acids 21 to 253 (233 residues), 168.2 bits, see alignment E=3.5e-53

Best Hits

Swiss-Prot: 51% identical to SQD_PSEPU: Sulfoquinovose 1-dehydrogenase (PpSQ1_00405) from Pseudomonas putida

KEGG orthology group: None (inferred from 65% identity to bxe:Bxe_A0549)

Predicted SEED Role

"Putative oxidoreductase in arabinose utilization cluster" in subsystem L-Arabinose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>OKGIIK_12515 3-oxoacyl-ACP reductase (Rhodanobacter sp. FW510-T8)
MSMFATYPSLVDRTVFVSGGATGIGAAFVGHFAHQGSRVAFIDIDREHGEQLASELGDAR
HRPLFLPCDVTDLDALAASIAKARAALGPIGVLVNNAANDVRHAFGDTGAIEFDRSMAVN
LRHQYFATQAVREDMQRLGGGSVICLGSTGWMKKNAGYPMYAMAKAAVRGLVNGLARELG
RDRIRINALVPGWVITEKQQRLWLDADGEAEIARVQCLPGHLMADDLARAALFLAADDSR
MCTGQDFIVDGGWV