Protein Info for OKGIIK_12320 in Rhodanobacter sp. FW510-T8

Annotation: AbiEi-3-N domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 PF17194: AbiEi_3_N" amino acids 6 to 97 (92 residues), 76.4 bits, see alignment E=1.4e-25 PF11459: AbiEi_3" amino acids 102 to 265 (164 residues), 114.5 bits, see alignment E=3.8e-37

Best Hits

KEGG orthology group: None (inferred from 72% identity to bac:BamMC406_6590)

Predicted SEED Role

"Ynd" in subsystem Type 4 secretion and conjugative transfer

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>OKGIIK_12320 AbiEi-3-N domain-containing protein (Rhodanobacter sp. FW510-T8)
MSDQKEGKLNLLLGRLGDTELVSSRWLRTQGYSNSLVARYVASGWLVSPTRGGYMRKSGR
LQWESVVRALQIGEGLALHVGGRFALALHGHEHYLRLGEASTVTLYGAARLPSWATRLPL
AEHFEYSGRGPFDFPSPALDPDVPDQTLLDQGLDRREPVQSAVGIVCSTPERAMLELCDE
SPTAPLVYEVDALMQAMTSLRPKRVGMLLHHCRSIKAKRLFLALAERHRHAWLAHVSLDG
VDLGHGKRSLIPGGRLHPVYQITLPGDLDEHLG