Protein Info for OKGIIK_11955 in Rhodanobacter sp. FW510-T8

Annotation: Efflux transporter periplasmic adaptor subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 27 to 49 (23 residues), see Phobius details TIGR01730: efflux transporter, RND family, MFP subunit" amino acids 74 to 408 (335 residues), 178.2 bits, see alignment E=1e-56 PF16576: HlyD_D23" amino acids 74 to 320 (247 residues), 73.1 bits, see alignment E=3.2e-24 PF13533: Biotin_lipoyl_2" amino acids 86 to 131 (46 residues), 37 bits, see alignment 3.3e-13 PF13437: HlyD_3" amino acids 209 to 312 (104 residues), 59.8 bits, see alignment E=5.7e-20

Best Hits

KEGG orthology group: None (inferred from 56% identity to sml:Smlt0363)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>OKGIIK_11955 Efflux transporter periplasmic adaptor subunit (Rhodanobacter sp. FW510-T8)
VGNAELLKELRIERHQREDHGRHPGRWPWIAVAVGVVLLALGGAAWLFVGHRVVAVQTAL
AVAPGAGSEAGAVLQATGYVTARRRATVSAQITGTLTAVLIEEGDHVTQGQVLARLDDSG
FKAGLAAAKAQADSAQAQVAQIQAQLAQGIHDAARLESLAARGLVSKQAAEQARTQVDSL
RAQLNAQQQQARAAVAQAAVAQVNFDYCVVRAPFSGVVTTKDAQVGEIISPLSAGGGFTR
TGVGTIVDMDSLEIDVDVNEAYIGRIKPGMPAEAVLDAYPDWKIPAHVVAIVPTADRGKA
TIKVRVALEKKDARVVPDMGARVSFLEEKPKAAASVPQGVLVPATAIVQRDGRSVVFVLD
GNRVRQRAVNPAAQAHGDLRLLPAAVKPGDSVVVSPPAELKDGSDVQMKKP