Protein Info for OKGIIK_11755 in Rhodanobacter sp. FW510-T8

Annotation: Uracil-DNA glycosylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 PF03167: UDG" amino acids 39 to 190 (152 residues), 77.2 bits, see alignment E=7.1e-26

Best Hits

KEGG orthology group: None (inferred from 60% identity to dar:Daro_1297)

Predicted SEED Role

"Hypothetical protein VC0266 (sugar utilization related?)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>OKGIIK_11755 Uracil-DNA glycosylase (Rhodanobacter sp. FW510-T8)
VTARQVHTLDALLADIRSCRTCALQQPPGLRPVLQASTRSRLLIVSQAPGRKVEETGIPF
NDVSGERLRDWLRIDRAAFYDADKVAIVPMDFCYPGKGKSGDLPPRPACAAIWHPRLLPL
LTQVRLTLAIGQYAQAGLLGDVRGATLTDTVGDWRTHLERGVLPLPHPSPRNRLWLTRNR
WFEAELLPVLRERVAAALRGDD