Protein Info for OKGIIK_11610 in Rhodanobacter sp. FW510-T8

Annotation: LPS-assembly protein LptD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 793 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF19838: LptD_2" amino acids 222 to 369 (148 residues), 42.4 bits, see alignment E=3.9e-15 PF04453: LptD" amino acids 333 to 696 (364 residues), 282.9 bits, see alignment E=5.2e-88

Best Hits

Predicted SEED Role

"Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (793 amino acids)

>OKGIIK_11610 LPS-assembly protein LptD (Rhodanobacter sp. FW510-T8)
MPKLPPRRLLAVAAALALIGGQADAHPARTPAANGTDQAADQACPLGSFHCARRPLNYAM
CRPNALLEFYDPALSTDSSLRETSPTQVQAQHVDSSDQSVYHLSGEVRLQRADQLLQADR
VDYNDTSTDYDARGNVRYQEASQLLAASHLRGNTDASRGIADDVRYQLLEARGNGSAKQG
HMLDALHTRYTMATYSTCDVGHHLWEFRAKSITINKDTGVGVARNATMRLGNVPFLYLPY
FSFPVDDRRKSGFLYPTIGHSSRSGYEISTPYYLNLAPNYDATLDPRYYSDRGAMLAGEF
RYLLPGTNGQLNVEYVPRDHGKNDGLANTQGDSRYLVRFSDRTQLWSGWQFVGSYNHASD
SSYLYDFGNNLSHTAVYMLDSGAAIMGGGKWWSASFGGTIYQNLNPFVTDSVLPYKQLPY
ARFSMDVPLSRWLEVGMDSSAAAFRKNGFIGGQREDLYPYLAASFGTSAWFVRPRLAYRY
TAYQLDGDYRDYGFGGRLGGGATSPFDQKSPSRALPIVSLDSGLVFDRSTTLFGSSYTQT
LEPRLYYLYVPYRNQNNLPLFDTNVMSFDYWQLFSTNQFSGADRQMDANNLTAALSTRLL
DDGGVERVSASIGQIHYFSPQKVLGTDWVHSAYVAQLDVQLNDRWRLNTAYQWNPNTRLT
DMAAVELQRRVRTDGIFNFSYRYRRGLLEQYSASLVYPVSERWRLVGAWTYSVKDHESVD
ALAGVEYDSCCVSLRLVGRSYVNQYYYGFGPAPTGNNLNHRDNAVMFEVVFKGLGSTGGQ
IDPLLRRDILGYQ