Protein Info for OKGIIK_11505 in Rhodanobacter sp. FW510-T8

Name: purL
Annotation: phosphoribosylformylglycinamidine synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1288 TIGR01735: phosphoribosylformylglycinamidine synthase" amino acids 4 to 1286 (1283 residues), 1833.9 bits, see alignment E=0 PF18076: FGAR-AT_N" amino acids 36 to 146 (111 residues), 99.3 bits, see alignment E=3.4e-32 PF18072: FGAR-AT_linker" amino acids 167 to 216 (50 residues), 78.6 bits, see alignment (E = 1e-25) PF02769: AIRS_C" amino acids 425 to 580 (156 residues), 119.1 bits, see alignment E=5.2e-38 amino acids 830 to 956 (127 residues), 53.7 bits, see alignment E=6.8e-18 PF22689: FGAR-AT_PurM_N-like" amino acids 643 to 802 (160 residues), 255 bits, see alignment E=6.2e-80 PF13507: GATase_5" amino acids 1036 to 1287 (252 residues), 343.7 bits, see alignment E=1.4e-106

Best Hits

Predicted SEED Role

"Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3)" in subsystem De Novo Purine Biosynthesis (EC 6.3.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1288 amino acids)

>OKGIIK_11505 phosphoribosylformylglycinamidine synthase (Rhodanobacter sp. FW510-T8)
MIVLDGQNALSPFRLERLNARLDALHRGVRVQASWFVYFIDAETAPEGALRQRLLAVLEA
KDVIAPEPATLWVVPRLGTISPWSSKATDILHGAGFDVRRVERGLAWLVAGLPPAGAPDH
AAIMAVLHDAMTQSVLQRIEDAQGLFLAGSPGELVHVALGADPRGALAAANARLGLALAD
DEIEYLADRYAELGRDPTDAELFMFAQANSEHCRHKVFNASWTVDGVEQDKSLFGMIKHT
HQHAPAHTLSAYSDNAAVIEGSTGRRFFADPADGVWRDHEERIDYAIKVETHNHPTAIAP
WPGAATGAGGEIRDEGATGRGGKPKAGLTGFSVSDLRIPGLPRPWEVDRPLPPRMASAFE
IMRDGPLGAAAFNNEFGRPCLGGYFRSYEHETGEAGLRRGYDKPIMLAGGLANLRPGHVL
KHAVQPGNKVIVLGGPAMLIGLGGGAASSVASGASSEELDFASVQRDNAEMERRCQEVID
ACWRCGDANPIVSVHDVGAGGLSNAIPELLNDAGVGGVIDLSKIPCDDPSLSPMQVWSNE
SQERYVLAIAPADLPAFEAMCRRERCPHAVVGEATAERRLLVTDPRRELTVIDLPMDVLF
GKPPRMHRDASRHKPRVDLLPDLTGIGMDEALLRVLRLPTVGSKSFLITIGDRTVGGLNH
RDPMVGPWQVPVADCAVTMVDFDGYAGEAMAMAERAPVALLSSADAARLAVGEAITNLAA
APIASLGEVRLSANWMAAVNHPGEDAALFDAVHAVGMELCPALDISIPVGKDSLSMQTVW
QDGATAQRTVAPVSLAITGFARVDDVRRTLTPQLRLHRGDSALWLIDLGAGRSRLGGSAL
TQVFGRSGGVPPNLDDARRLKALFELIQEANANGLLLAYHDRSDGGVLITLLEMAFAGHC
GLEIHLDGWAEAALRALFNEELGAVVQVAEANREAFEALVVKHGLAGICHRIGRPKEKLG
IKLFLGDETLFKWNWSVLFRAWNETSHAMQRLRDNPQSADAELEWRLDDADPGISPKLTF
DPAQDVAAPFIGTGARPRIAVLREQGVNGQVEMSAAFTRAGFDAVDVHMSDLASGRAKLA
DFRGFAACGGFSYGDVLGAGRGWATSILYNDMLREQFAAFFADEAKFALGVCNGCQMMSQ
LKEIIPGAQHWPKFLRNASEQYESRLATLEVLDSPSLFFKGMAGSRIPVAVAHGEGRVSF
PHACSPSKSNGAVRFVDNRGKPTENFPLNPNGSPGGLAGFTAADGRVTILMPHPERVFRS
VQLSWHPQQWGEDSPWMRMFRNARAWCG