Protein Info for OKGIIK_11340 in Rhodanobacter sp. FW510-T8

Annotation: TonB-dependent receptor

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 842 signal peptide" amino acids 1 to 37 (37 residues), see Phobius details PF07715: Plug" amino acids 68 to 184 (117 residues), 60.4 bits, see alignment E=2.2e-20 PF00593: TonB_dep_Rec" amino acids 336 to 791 (456 residues), 100.2 bits, see alignment E=2.5e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (842 amino acids)

>OKGIIK_11340 TonB-dependent receptor (Rhodanobacter sp. FW510-T8)
MHAIRSKQITGTRQAGLTRLPLAAAICLAMAAPAFAQDAGQAQAPSAKPKTTTLSVVNVT
AQKRVENLQKVPISINVLETDQLEALHVQNFNDYVKYLPSVTFQQGGGGIATGPGFASIY
MRGVASGGNTNHSGSQPSVGVYLDDQPVTTIQGPLDIHMYDIARIEVLAGPQGTLYGASA
EAGALRIITNKPDTSGFAANYAIGVDKVAHGGVGFTAEGMLNIPISKSAAVRIVGWREHD
AGYIDNQAGSRTFPVSGITVSNADNCKPGPMLECFGHARKHYNDANTNGARAALKVDLND
SWSISPTLMGQQTISHGTFAGDPAIGDLAVTHFYPERVNDRWWQGALTVQGKIGNFDLTY
AYAHLKRDQEEQTDYNDYSFWYDTLLSYGAYIHDNSGALINPSEFISDRDHYANSSHELR
IVSPKEDRLRLVAGAFWQKQKHDIMQDYQINKLATSLSVAGWPNTIWLTRQMRYDYDKAL
FGELSYDIIPDELTATVGERYFRTSNDLYGFYGFSKGFSPNSSYGEAGCISPQPFIDAPC
LVFNKHVKESGSLGKVNITWNISPTKMIYATRSEGFRPGGVNRAGQLPPYQADFLTNLEL
GWKTSWFDNRVSFNGAVFREKWNDFQFNILGANGLTQIKNANSARIDGLESQVNWQATYN
LNLSTGLAWYNAKLTANYCGFTDANGNTVTYCPAGTINPNTGAVVNGPLAPKGTQLPITP
RFKANLVARYTFSLGGNDAFVQAAFVHVGRRTTDLRLLERSLLGNLPAYNSVDFSAGIQK
GSWSLNAYVDNAFDKRGALYKFTECGVTVCAAHNVVAQYPNGQVYTGFSQPRTFGIRFKQ
DF