Protein Info for OKGIIK_11050 in Rhodanobacter sp. FW510-T8

Annotation: Histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 1979 transmembrane" amino acids 1800 to 1822 (23 residues), see Phobius details PF01627: Hpt" amino acids 12 to 109 (98 residues), 27.1 bits, see alignment 9.9e-10 amino acids 686 to 777 (92 residues), 45.2 bits, see alignment 2.3e-15 amino acids 874 to 962 (89 residues), 41.6 bits, see alignment 3e-14 amino acids 1191 to 1283 (93 residues), 51.2 bits, see alignment 3.1e-17 PF02518: HATPase_c" amino acids 1552 to 1687 (136 residues), 63.6 bits, see alignment 5.6e-21 PF01584: CheW" amino acids 1692 to 1823 (132 residues), 77.3 bits, see alignment 2.3e-25 PF00072: Response_reg" amino acids 1854 to 1965 (112 residues), 98.7 bits, see alignment 5.7e-32

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1979 amino acids)

>OKGIIK_11050 Histidine kinase (Rhodanobacter sp. FW510-T8)
MRLQDHIDFTTLQWVKPELDDTLSIAREALESYVDNPGKRDYMRTCADHLHQVRGTLQMV
ELYGAATVAAEMEELAIALLGDRVAQREEAYAALMRGLMQLPDYLERLSGGHRDVPVVLL
PLLNDLRASRGLEPLPESAMFHPNLDAFLPEQAPAAMSEAYAEAHRGELVDLRLRFQQQL
LGWFRGQNAAVQLANMRKTLLAITARCHHVHGRRLWWIASGVLEGLEQGQLKGFAGEIRQ
LVGKVDRNIRQLIEHGEGSLRGGEADEVACKLLYIVAQAKPRSPQMELLRATYALDSLLP
DAGELEHARGSMAGHNRALLDSVSRALKDDLLRVKEALDLFLRQQNGDPAQLAAQGEVLE
RVGDTLGMLALSVPRRVVGEQRRVLDEIANRMRPADEETLLDVAGALLYVEASLDDHIES
LGSEEESGSSEATHGLPRSEALGVVTTLMQEAISNTGRVKDAIVAFVESGWEHDRLAGAP
ALMDEVAGAMNMLSSPRPAELAQGIGRFIHYELLDDRRVPSGAQMDQLADALAALEYYLE
AAREHRGGLEHILDVAEHSLGLLGYWPVPSARVAPAAAEAAVPISRRIDDEEHPELSESV
SLLPGQDLGHLFVGDSASPAGPVHDLDGLRLAPTEATAAAGWGGHAAVDQDDWVEIEEEV
VEQVPVRDALAANTRFNTSAEGIDDDIREIFLEEMQEEIDNLRTAEQAWLVDPAQTASLV
GIRRSFHTLKGSGRLVGAGVLGEFAWKVEDMLNRVLDNTIEPNANVQALVQHAIDALPQL
LAALKGEGAPVAPLSAIMHTAEQLAAGKPARVEDHAPRATETVRRIVRRRVPRFEAAAGA
VPVAAVTDRETAAAQAPVEPVMAEPVMPPVDPVLLEILRSEVAQYLQTIRAAVQRSDIEL
PIGEELLRAVHTLHGAIAMVDIPLLTQLLSPLEGLFKRLRAANLPLTSEGVHLLDQAVDV
VDRVMGQFDAAEPRLPNADPLTAQIVNLRDRYPESKVAHVVYEPRADEMEPEELATAADH
AGVDEAVMTASLEAGMLEATSAPSDESPAVGQASDVHPDQAHHDEVTAELMAALGAFDPV
QAMAGKLAAEKQAAERAEAERAAAERQAAERAEAERAAAEKQAAERAEAERAAAEKQAAE
RTEAERVAAGKRAAERAEAERLAAAGKAATEVAATQAPVHALAGSGQIDADLLEVFIDEA
REILDHADGVLAQWHAEPGNLVHVPELQRDLHTLKGGARIAGLVPVGDLSHAIETLLEKP
IRDSSGTGPLIAALEASFDQLHALVQQVSQGRTPDYPQAMINRLLALAGETALADDAQPH
VAATAAAAPAPAVPPSLAAVAAEGTDHLPELMPEVEEEVRSSQEQIRVRADLLDNLVNHA
GEVAIYRSRLEQQVAGYRFNLVELEQTVSRLRSQLRMLEIETEAQIIARFQREHREAGMA
AFDPLELDRYSQLQQYSRALAESVSDLVSIQNMLDELTRQAETLLIQQSRVSTELQDGLL
RTRMLPFDTMVPNLRRTLRQAAQEEGKHAQLYVDGAHGEMDRNLLDRIKAPFEHMLRNAI
AHGIEAPAERRKLGKPAEGAVHITVAREATEVVVRVSDDGRGLNREAIRKRGVERGLLRP
ETRPTDNQLLSLIAQPGFSTASQVTQLAGRGVGMDVVANEIKQLGGSLSIESEEGKGTTF
VLRLPFTLAVTQAILVRIGEATFAIPMTSVQGVARVNPADLAALMAEDEPSFRYGSEAYG
IHDLAELLGLPPGLPAEDEQQPLLLTRAGDLRAAIRIDAVLGSREIVVKSVGPQISSVPG
LLGATIMGDGSVLIILDLAPLVRHGIIRREQRLAEGLSAVQTPEVEEAQVRPLVMVVDDS
ITMRKVTGRVLERHEYEVSTAKDGVDALEKLHERVPDLMLLDIEMPRMDGYELATHMKAD
PRLRDVPIIMITSRSGDKHRQRAFDIGVDRYLGKPYQEAELLAQIAEVLEQRAVEPIHD