Protein Info for OKGIIK_10350 in Rhodanobacter sp. FW510-T8

Name: rpsD
Annotation: 30S ribosomal protein S4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00163: Ribosomal_S4
  • amino acids 3 to 96 (94 residues), 99.4 bits, E=1.6e-32
• TIGR01017: ribosomal protein uS4
  • amino acids 3 to 208 (206 residues), 259.4 bits, E=1.1e-81
• PF01479: S4
  • amino acids 98 to 144 (47 residues), 74.6 bits, 4e-25

Best Hits

Swiss-Prot: 77% identical to RS4_XANOR: 30S ribosomal protein S4 (rpsD) from Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)

KEGG orthology group: K02986, small subunit ribosomal protein S4 (inferred from 77% identity to psu:Psesu_2312)

MetaCyc: 66% identical to 30S ribosomal subunit protein S4 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S4p (S9e)" in subsystem Ribosome SSU bacterial

Protein Sequence (208 amino acids)

>OKGIIK_10350 30S ribosomal protein S4 (Rhodanobacter sp. FW510-T8)
MARYRGATCKLARREGADLSLKSPARALDSKCKLENKPGQHGANKRMRMSDYAVQLREKQ
KVKRIYGVLERQFSNYYTKATTLKGNTGENLLRLLESRLDNVVYRMGFAVTRAQARQLVA
HKAILVNGKKVNIPSYQVRPGDAIALTERARSQLRVQEAATVFDTMDLRPGWVEVDSKKF
EGTFKSVPDRGDLPTDINEALIVELYSK