Protein Info for OKGIIK_09970 in Rhodanobacter sp. FW510-T8

Name: iscR
Annotation: SUF system Fe-S cluster assembly regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 161 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details TIGR02944: FeS assembly SUF system regulator" amino acids 1 to 130 (130 residues), 168.7 bits, see alignment E=7.9e-54 TIGR00738: Rrf2 family protein" amino acids 4 to 132 (129 residues), 104.8 bits, see alignment E=3.2e-34 PF02082: Rrf2" amino acids 5 to 132 (128 residues), 121 bits, see alignment E=3.8e-39

Best Hits

KEGG orthology group: None (inferred from 60% identity to psu:Psesu_1100)

Predicted SEED Role

"Iron-sulfur cluster regulator IscR" in subsystem Rrf2 family transcriptional regulators

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (161 amino acids)

>OKGIIK_09970 SUF system Fe-S cluster assembly regulator (Rhodanobacter sp. FW510-T8)
MLRVSRLTDYATVVMTCIAAHPSEVLSAVQIADESRLELPTVSKLLKALGHAGLVESFRG
VNGGYRLARPAGEISLAEIVEALEGPIGMTECGVAEGQCDRESQCGVRGSWQLINNVLDN
ALRAVSLADMLKPQPRPSRRIAAVPVSQIAMPAKAARITTE