Protein Info for OKGIIK_09870 in Rhodanobacter sp. FW510-T8

Annotation: Amino acid permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 41 to 60 (20 residues), see Phobius details amino acids 91 to 110 (20 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 150 to 172 (23 residues), see Phobius details amino acids 192 to 216 (25 residues), see Phobius details amino acids 237 to 257 (21 residues), see Phobius details amino acids 276 to 296 (21 residues), see Phobius details amino acids 329 to 349 (21 residues), see Phobius details amino acids 355 to 376 (22 residues), see Phobius details amino acids 394 to 415 (22 residues), see Phobius details amino acids 421 to 440 (20 residues), see Phobius details PF00324: AA_permease" amino acids 13 to 439 (427 residues), 391 bits, see alignment E=7.6e-121 PF13520: AA_permease_2" amino acids 14 to 418 (405 residues), 119.3 bits, see alignment E=2.1e-38

Best Hits

Swiss-Prot: 51% identical to YTNA_BACSU: Uncharacterized amino acid permease YtnA (ytnA) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 59% identity to bur:Bcep18194_B0065)

MetaCyc: 46% identical to phenylalanine:H+ symporter PheP (Escherichia coli K-12 substr. MG1655)
TRANS-RXN-56

Predicted SEED Role

"D-serine/D-alanine/glycine transporter" in subsystem Glycine and Serine Utilization or Pyruvate Alanine Serine Interconversions

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (454 amino acids)

>OKGIIK_09870 Amino acid permease (Rhodanobacter sp. FW510-T8)
MTQSLQRQLTPRHITFMALGMCIGAGLFLGSASTIRLAGPSVLFAYLFGGAMIFIIMRAL
GEMAAHEPVAGSFGAYAHKYISPFAGYLTSWNYWILMMGVGIAESTAVGIYMKTWFPDSP
QWVWAFASVAMIGGLNLLAVKVYGELEFWFALVKVLTVVLMIAGGCAMIWLGWGNGGQPV
GLSNLWSHGGWFPNGVTGMVLALPVLVFSFGGIETIGMAAAEAAQPERTIPRAVNSVIWR
ILIFYIGSLFVIMAIYPWNALDAHSSPFVTTFARLGIPSAAGLINFVVITAALSSFNSTT
FSGSRMLHSLAGKGQAPAAMGRVSAQGVPVRGVLVTMVFLLFGVLMNYLVPGRIFGMMMS
ILAFNTVWTWGMVLVAHWRFRRRQAQPLGFRLRAWPLSSVLCLAFLAFVWVMLGYSPDTR
VALYVGVAWIALLTAAYYAFGVERRMRKVPAEAA