Protein Info for OKGIIK_09850 in Rhodanobacter sp. FW510-T8

Annotation: DUF502 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 221 transmembrane" amino acids 9 to 27 (19 residues), see Phobius details amino acids 33 to 52 (20 residues), see Phobius details amino acids 64 to 85 (22 residues), see Phobius details PF04367: DUF502" amino acids 72 to 173 (102 residues), 100.5 bits, see alignment E=2.4e-33

Best Hits

KEGG orthology group: None (inferred from 56% identity to xal:XALc_2483)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (221 amino acids)

>OKGIIK_09850 DUF502 domain-containing protein (Rhodanobacter sp. FW510-T8)
MPRLRVKRYLLTGLLTFIPLWVTWLVFKFVLGLLAGIGAPLVAGLLNGLALVAPHAAESL
KAEWLTFIVALLVTLAALYLLGFVANRVIGQRFLNAFDSLLARIPLVQTIYGGTKKLMAV
LQNKPSGMQRVVLIDFPRRGLKVVGFVTRVMVEEGSGREMAAVYIPTTPNPTGGYLELVP
VDELTPTDWTMDQAMAFIISGGAVAPDTLPASPALPHRDES