Protein Info for OKGIIK_09235 in Rhodanobacter sp. FW510-T8

Name: recD
Annotation: exodeoxyribonuclease V subunit alpha

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 676 PF13604: AAA_30" amino acids 144 to 213 (70 residues), 28.4 bits, see alignment E=5.3e-10 amino acids 301 to 383 (83 residues), 56.5 bits, see alignment E=1.3e-18 PF13245: AAA_19" amino acids 146 to 215 (70 residues), 44.3 bits, see alignment E=8e-15 amino acids 300 to 370 (71 residues), 57 bits, see alignment E=1e-18 TIGR01447: exodeoxyribonuclease V, alpha subunit" amino acids 295 to 673 (379 residues), 322.4 bits, see alignment E=3e-100 PF01443: Viral_helicase1" amino acids 596 to 647 (52 residues), 22.8 bits, see alignment 3e-08 PF13538: UvrD_C_2" amino acids 601 to 645 (45 residues), 44.8 bits, see alignment 3.7e-15

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V alpha chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (676 amino acids)

>OKGIIK_09235 exodeoxyribonuclease V subunit alpha (Rhodanobacter sp. FW510-T8)
MNLPLPQAANADADERAIDQGLAQWVLGRTGSAPLAAAVRAASRAEGHGHSCATLTDPDT
DAGFDADALGELRRHDWVGDGSSFTPFVLDTQGRFYLWRNWQHETKLAEAILRRCAQRTL
PIAADTLASDLDTLFAGMPRGATDWQRAAVAAVPGARFFVLTGGPGTGKTTTVVRMLLML
LQHAQACGLPARPSIALAAPTGKAAQRLVQAIARGKAELQAALADDRPVGRALPAALHHP
NEDQPPADNVRPTALGDDPVGRAPPAALHHPNEDQAPAGTARPTELLRPNLPNLLQHIPH
ADARTLHRLLGYRPMDDSFDRGPHNPLAEDIVVVDEASMVDLAMMRQLLQALRPEAVLIL
LGDPGQLASVDAGSVLADIVAGAPRNRLPPALAGLLAPLLQQAPGSAGGDTPLAGQVLTL
THSWRAGSGLQRGVEALRDAPDPAWLDALLGKRSDGDLHLRHCPNPHALRACVDGWIDRH
AALLQALLTSPIDAGTALQNLHQLQILCALRDGPFGAQGLNELIARRLATRFGIDSGHAW
YHGRPVIITRNDYARGLFNGDVGIALQGAEGLHVWFELSDRDGNAGLRSFSPRALPAHES
AWAITIHRSQGSEYRDVAVILPPDEDNHVLTRELVYTAISRARSHAEIWATDGSLRAALS
RPIRRQGGLRKRLQSS