Protein Info for OKGIIK_09065 in Rhodanobacter sp. FW510-T8

Annotation: oligopeptide transporter, OPT family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 669 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 43 to 61 (19 residues), see Phobius details amino acids 73 to 98 (26 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 170 to 191 (22 residues), see Phobius details amino acids 213 to 243 (31 residues), see Phobius details amino acids 268 to 286 (19 residues), see Phobius details amino acids 322 to 342 (21 residues), see Phobius details amino acids 354 to 382 (29 residues), see Phobius details amino acids 390 to 409 (20 residues), see Phobius details amino acids 420 to 439 (20 residues), see Phobius details amino acids 459 to 479 (21 residues), see Phobius details amino acids 519 to 537 (19 residues), see Phobius details amino acids 556 to 578 (23 residues), see Phobius details amino acids 596 to 620 (25 residues), see Phobius details amino acids 640 to 661 (22 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 10 to 619 (610 residues), 348.6 bits, see alignment E=8.3e-108 PF03169: OPT" amino acids 14 to 618 (605 residues), 356.4 bits, see alignment E=1.7e-110 TIGR00733: oligopeptide transporter, OPT family" amino acids 14 to 619 (606 residues), 674 bits, see alignment E=1.9e-206

Best Hits

KEGG orthology group: None (inferred from 65% identity to net:Neut_2274)

Predicted SEED Role

"oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (669 amino acids)

>OKGIIK_09065 oligopeptide transporter, OPT family (Rhodanobacter sp. FW510-T8)
VSAQPLSVAPSRVEFTIRGLIIGIVITVVFTAANVFFGLKAGLTFATSIPAAVISMAILR
AMKNSTMQENNIVQTVASAAGTLSSIIFVLPGLIIIGWWNGFPFWMSFGICATGGVLGVM
YTIPLRRALVTDSDLPYPEGVACAEVLKVGSSGGEEAAGSVESGGAGLKAVVAGAIVSAV
FYVVVQTRLFADAVSSYFRVGDKGAATGFDFSLSFALFAVGHLVGLWVGVAMLVGALIGW
GWAVPHFLLLHPVAGPVADVAQGTWSHYVRFVGAGTIGVAAIWTLAKLVKPVIGGLAGAM
RASRARKSGQLHTLPRTEHDMPIGMVGLITLLCLIPVAWLLGHFSNISGLGEHTVLLVVG
GVLFVVILSFLVSAVCGYMAGLIGSSNSPLSGVGILVVIIAALLLVLGVKSLVPAEQGKA
LVAFALFITSIVFAVASIANNNLQDLKTGQLVDATPSLQQWALVIGVIAGAVVIPPVLDL
LNQAYGFLGAPGVDPARALPAPQAGLISALAQGVITGNIDWSLIIIGAVIGVGIIVLDEA
LARTGKSMRLPPLAVGLGIYLPTSTTLMVVVGALVGAWFDERAERGPRPEPTKQLGVLLA
SGLIVGESLLGVVVAALVAFSDKLGFANRNAPLALVGEGFHGAAIWIGGVVFVGVTWAMY
RWIGRMGQA