Protein Info for OKGIIK_08410 in Rhodanobacter sp. FW510-T8

Name: ssnA
Annotation: formimidoylglutamate deiminase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 455 TIGR02022: formiminoglutamate deiminase" amino acids 9 to 452 (444 residues), 597.8 bits, see alignment E=6.7e-184 PF01979: Amidohydro_1" amino acids 48 to 428 (381 residues), 110.1 bits, see alignment E=1.5e-35 PF07969: Amidohydro_3" amino acids 91 to 402 (312 residues), 37.3 bits, see alignment E=2.4e-13

Best Hits

KEGG orthology group: K05603, formimidoylglutamate deiminase [EC: 3.5.3.13] (inferred from 56% identity to rce:RC1_3235)

MetaCyc: 55% identical to formiminoglutamate deiminase subunit (Pseudomonas fluorescens)
Formimidoylglutamate deiminase. [EC: 3.5.3.13]

Predicted SEED Role

"Formiminoglutamic iminohydrolase (EC 3.5.3.13)" in subsystem Histidine Degradation (EC 3.5.3.13)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.5.3.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (455 amino acids)

>OKGIIK_08410 formimidoylglutamate deiminase (Rhodanobacter sp. FW510-T8)
MSSNAIAHFKAGHAWRADGWQAGAALGVDAGGRLQATAEPGGTALGRWVLPGMPNLHSHA
FQRAMAGLAERRGKAEDSFWSWRETMYAFAATIGPDELKAIAAQLYVEMLKAGYTSVCEF
HYLHHQPDGTPYAPAEAMSLALIEAAREAGIGLTLLPVLYISGGFDGRALVARQRRFGHA
VDAWLRLLETLRRQQGDEVCVGIALHSLRAVPEAALREVLASELAATGPIHIHLAEQVGE
VQDCLATRGARPVEWLFAHAAVDARWCLVHATHLTAAETAQLARSGAVAGLCPTTEANLG
DGLFPLADYLDAGGTLGIGSDSHISISPVEELRWLEYGQRLATRHRNIAARRQGDSVGET
LWRAALRGGALASGRPVGELRDGARADLIVLDDDSPLLAARDARSVLDSFLFAGNTPLVR
DVMIGGRWQVRDFRHRDEEHIAARYRNVVARLAGG