Protein Info for OKGIIK_08245 in Rhodanobacter sp. FW510-T8

Annotation: Penicillin amidase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 742 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF01804: Penicil_amidase" amino acids 53 to 731 (679 residues), 397.8 bits, see alignment E=7.4e-123

Best Hits

KEGG orthology group: K07116, (no description) (inferred from 66% identity to ccr:CC_1122)

Predicted SEED Role

"Penicillin amidase family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (742 amino acids)

>OKGIIK_08245 Penicillin amidase (Rhodanobacter sp. FW510-T8)
MHPHTSKTSCPRARRRHLPRLLLAVALLAAGLLATVQAAEPGQARRQRQAQAVTITRDDW
GIAHVHGRTDADAVFGMAYAQAEDDFNRVETNYLNSLGRLAETEGESAIWSDLRQKLFID
PVELQALYAKSPTWLQALMNSWADGLNYYLATHPDVHPRVIKHFEPWMALSFSEGSIGGD
IERVSLKQLEAFYGRNSAALARADTPASWVEPTGSNGFAIAPKLSADSHALLWINPHTSF
FFRSELQMSSDEGLDAYGAVTWGQFFVYQGFNRHIGWMHTSTGADVVDEFAETIVRQGGQ
LFYRYGKELRPVATRTIRVAYRAKDGAMATRSFDAHFTHHGPIVRAADGKWIAVAMMNKP
LEALQQSWLRTKASDYASYMKIAELKANSSNNTIFADDKGEIAYLHPQFIPKRDNRFDYT
KPVDGSDPATDWKGLHALDEAPHLLNPPNGWIMNTNNWPYSAAGKFSPRQQDYPRYMDSF
GENPRGIHATRVLDGVRDFSKASLIGAAFDSLLPAFSRLLPVLVHDYDMLPDHDPLKPRL
AGPVALLRSWDYRWGIASMPTSLAVFWGDTLWDKVHAEAESGHQSVYDYMAGDAGAKARL
DALVEASDRLEKDFGSWGVPWGEVNRYQRNDGAIVQKFDDARPSIPVPFVSSRWGSLASF
GAHRWPGTRRYYGTSGNSFVAVVEFGPKVSARAITAGGESGHPDSKHFNDQAERYTTGNL
RTVYFWPEQLKGHTERVYHPGE