Protein Info for OKGIIK_07040 in Rhodanobacter sp. FW510-T8

Name: smc
Annotation: chromosome segregation protein SMC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1169 TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1159 (1158 residues), 1026.9 bits, see alignment E=0 PF02463: SMC_N" amino acids 3 to 1152 (1150 residues), 217.4 bits, see alignment E=4.3e-68 PF13476: AAA_23" amino acids 6 to 231 (226 residues), 67.2 bits, see alignment E=8.4e-22 PF13304: AAA_21" amino acids 27 to 100 (74 residues), 30.6 bits, see alignment 9.6e-11 PF06470: SMC_hinge" amino acids 526 to 616 (91 residues), 32.8 bits, see alignment 2e-11

Best Hits

KEGG orthology group: K03529, chromosome segregation protein (inferred from 59% identity to psu:Psesu_1738)

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1169 amino acids)

>OKGIIK_07040 chromosome segregation protein SMC (Rhodanobacter sp. FW510-T8)
MRLTTIKLAGFKSFVDPTTLHLPSNMIGVVGPNGCGKSNIIDAIRWVMGESAASRLRGDS
LTDVIFSGSNTRKPVGQATVELIFDNADGSIQGEYGQYAEISVKRQVTRDGQSAYFLNGT
RCRRRDITDLFLGTGLGPRSYSIIEQGMISQIIEAHPEELRTHLEEAAGISKYKERRKET
ESRIKATRENLDRVRDVRDEVDKQLEHLNRQARAAERWKALKEEQTRKEAELRALEYRGL
KSQHAGEGEVLSAAEIEIEKQLAGQRQIEAQLESVRERHTDASEHLNAVQAEVYKVGAEI
ARVEQQVRYNRETADRLQRAHGEAEREHAELAAHIATDREQVEALRLALAEGEPKLEALQ
QLQDDTAEAQRSTEAKLADWQQRWDSHTRNAGESNRAAEVERTKLNYLDRQAIDLSRRRE
ALEAEQKATDVAALDAAGQQLIDEHDTQRERVETLGSLLDQHKSGHEKVLEEERQVQSTL
NEARQQLQAARGRHASLEALQHAALGQEESAASGWLARLGLDRSRRLGESLQVEAGWETA
VETALSGFLDSVLVDGSHALAAEFGALENADVALLDAAGGGANTAGTLAAHVRGPAAALA
ILGHVLTAESLDEAHQRVAALSALAPYQSVITRGGEWLGPGWARVRRAQGSQVGVLARER
ELRLLVEQVAALEAQLEEASGRLDALRTSKFEAERARDDAQRELYNAHRRQSELAGQLQS
HRGKLETARARAEKVNGELNDLAGQLDELQGQTREARARLDESVGLMGDLEDQRRELENE
RRTLLEAREEARMNAREAAEQSHALALALESKRSSLASMEQALGRMDAQLRQIEARRNEI
TEQLAAGSDPIAELEAERQTYLDQRLLVDRQLVEARRALEDCDVEFRKLERQRHLAEQGL
ASLRESLSEKRLAAQALQLRAEQLAEAIAASGLALETLLAELAEDIDANQWRSQLNDIGQ
KIARIEPVNLAAIQEHAEQSERKTYLDNQLADLTNAMETLEGAIKKIDRETRQRFKETFD
KVNAGVQELFPRLFGGGHAYLELTGDDLLNTGVSIMARPPGKRVSNITLLSGGEKALTAV
SLVFAIFSLNPAPFCLLDEVDAPLDEANVGRFSNMVREMSEKVQFVFISHNKATMEAASQ
LCGVTMREPGVSRLVQVDLAEAAKLAGAA