Protein Info for OKGIIK_06600 in Rhodanobacter sp. FW510-T8

Annotation: DUF748 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1211 transmembrane" amino acids 31 to 51 (21 residues), see Phobius details PF05170: AsmA" amino acids 33 to 241 (209 residues), 34.5 bits, see alignment E=1.1e-12 PF05359: DUF748" amino acids 163 to 304 (142 residues), 79.9 bits, see alignment E=2.5e-26 amino acids 368 to 520 (153 residues), 64.8 bits, see alignment E=1.1e-21 amino acids 578 to 729 (152 residues), 81.5 bits, see alignment E=8e-27 amino acids 820 to 965 (146 residues), 113.8 bits, see alignment E=8.7e-37

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1211 amino acids)

>OKGIIK_06600 DUF748 domain-containing protein (Rhodanobacter sp. FW510-T8)
MIDRHFLAGPRWVAVRERAERLYRSHRLRRNLLIAAIVLLVFGLLGFFAAPPIIRSQLQT
RLGAALGRTVTIGAAHLNPYTLRLDLDQLHIADADGHSPFVDVDRLTINASWTSLFRLAP
VLDELAVQRPRIRLVRTGPQRFNFSDMVERFSRPSDPNAKPARFALANISVHGGDIAFDD
QVLKTSHRVDRIEVGVPFLANLPADTDLFVQPLLAMRVDGSPLRIEGQTKPFANSRESVM
TFQIDHLDLPKYLAYAPTPLPVAVPRGQLSGKLELHFVVAQGGNQLRLGGGLALDDFALN
NPDGVALLELERGTAELVDVQPLQSRYHLGAISLDKATLHYHRTAGGHSNFDSLAAPAPP
GPAGRPTEVRIDTLSLSASRFDYVDLGSSGDAPGTLQLENLHGTLRGLSTVAAPAAALDI
AGQLNGGGVAGNGGLDLAAARFNGKLKLQGVQLAQLQPLALPQLKATVAGGTLDADGQLR
AEWGKAVNLHLEPAALAVNGLALKRRDGQATPLAWKSLQLKIAILDLLSREARLDSVLVD
GLKLDLQRQRNGTIDLAALMGAPPAPAKGGTAAAAPAWRWSVANLQLQDSDVTFKDLAAD
RPMPLMVHADHYSIDGLSDDLRKPLKLALTGKLGKGDYGVEGSVKPRPLEADLHLKATGV
DIAPLQSLISVPLNVHIASALLSLDGRVRYSDRGKAPAWVDYRGQATFGRVRIQDKLTGD
DFLRWHSLTASGMAIRLGQGAPRADIGGIALSDFYTRVIINANGRLNLQDVVANPAAAPV
SVTREQGAAATPAKPRPAPATTTAPAAAVAAAPNAGPAAEIHIGQITLARGELNYTDNFI
KPNYTANVTGLTGKIGAFGTTGGTPPAELVLQGKLDENSPVDINGTINPLTPVAFLDIKA
KADGVELSHLSPYSGKYAGYPITSGKLNVDVHYQLDQRKLAANNHIFITQLTFGDRIEGT
GASHLPVKLAVALLKDTDGNIDLNIPVSGSLDDPQFSMGSLVWHAFVNLITRAVTSPFRL
LASIGGGNKPDLGYVEFAPGSAVLDAGARSRLEQLVAFLQSKPSLALDISGRIDPSVDEN
GLRKVMVDDLVRQAKADDDGKHEDPATLQLTPDEYQHYLVRVYKRAKFPKPKNIIGLTKS
QPPEEMHQLLETNMAVDAEAMKKLAERRALAVQAWLKGKLDDKRMTLQAPKLDAKGIEDK
GKTTRVDFGLH