Protein Info for OKGIIK_06235 in Rhodanobacter sp. FW510-T8

Annotation: Putative MFS family arabinose efflux permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 77 to 98 (22 residues), see Phobius details amino acids 104 to 127 (24 residues), see Phobius details amino acids 140 to 172 (33 residues), see Phobius details amino acids 196 to 216 (21 residues), see Phobius details amino acids 223 to 246 (24 residues), see Phobius details PF07690: MFS_1" amino acids 3 to 211 (209 residues), 64.9 bits, see alignment E=3.3e-22 amino acids 103 to 253 (151 residues), 38.3 bits, see alignment E=3.9e-14

Best Hits

Predicted SEED Role

"FIG00855020: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>OKGIIK_06235 Putative MFS family arabinose efflux permease (Rhodanobacter sp. FW510-T8)
MAGGMAFGSTFGAVLEPLLGWRGLFVLVALAAVGVFVVLLLRRSLISSRRKAVPETMGEL
FLGYRDLIGTPRGQRTYGYVFVNSIFHSGVFTWLGVYFEQRYGLGPVGIGVALLGYGIPG
FLFGPLIGRAADRWGRARLLPIGLGLGALGAATLIFNGPLILAIVAVTVLSLGYDMTQPL
FGGIVTALGGKRPGQAMGLNVFALFAGFGVGSLLFGEALRLGFGMALGIFVMVQALATAL
SIGWFSAEVPVNRVNS