Protein Info for OKGIIK_05085 in Rhodanobacter sp. FW510-T8

Name: pTR2
Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 transmembrane" amino acids 13 to 32 (20 residues), see Phobius details amino acids 41 to 59 (19 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 106 to 125 (20 residues), see Phobius details amino acids 131 to 151 (21 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 212 to 232 (21 residues), see Phobius details amino acids 252 to 269 (18 residues), see Phobius details amino acids 296 to 317 (22 residues), see Phobius details amino acids 329 to 351 (23 residues), see Phobius details amino acids 363 to 385 (23 residues), see Phobius details amino acids 396 to 417 (22 residues), see Phobius details amino acids 436 to 457 (22 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 10 to 459 (450 residues), 138.4 bits, see alignment E=1.8e-44 PF07690: MFS_1" amino acids 16 to 265 (250 residues), 43.7 bits, see alignment E=1.8e-15 PF00854: PTR2" amino acids 39 to 177 (139 residues), 126.3 bits, see alignment E=1.5e-40 amino acids 245 to 409 (165 residues), 127.3 bits, see alignment E=7.2e-41

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 79% identity to psu:Psesu_1362)

Predicted SEED Role

"Oligopeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (469 amino acids)

>OKGIIK_05085 MFS transporter (Rhodanobacter sp. FW510-T8)
MPEGQRTLAAKDVFHTFVIGVYFFPLLGGWLADRFFGKYHTVLWMSLVYCLGHACLAIFE
HNRLGFFTGLGLIALGAGGIKPLVASFMGDQFDRSNKHLAKVVFDAFYWIINFGSFFASL
LMPLFLHHFGAAVAFGIPGGLMFIATVVFWLGRRQYVMLPPPPPDPDAFSQVLRTALLTR
RPGQARPGLWIAAAGVLVALGGFSLIGSLGFVIVACLALVALIGGVGGGAWLQMERARGL
HPDAAVDGARNVLRVLVIFALTTPFFSLFDQKASTWVVQGGEMSMPAWFHPAQMQALNPL
LVMVLIPFNNLVLYPLLRRLGYEPTALRRMTAGIAFSSLAWIVVGGLQVVIDGGDPLSIV
WQVLPYALLTFGEVLVSATGLEFAYSQVPASMKGVVMSFWNLTTTAGNLWVLLANAAVRN
DAVTGSIARSGLSVTAFQMFFFAAFALLAALAFALYARRYREVDNYRSG