Protein Info for OKGIIK_04940 in Rhodanobacter sp. FW510-T8

Name: yerC
Annotation: TrpR , YerC/YecD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 111 PF01371: Trp_repressor" amino acids 17 to 95 (79 residues), 81.5 bits, see alignment E=1.9e-27 TIGR02531: TrpR homolog YerC/YecD" amino acids 17 to 94 (78 residues), 62.2 bits, see alignment E=2.4e-21

Best Hits

Swiss-Prot: 38% identical to YERC_BACSU: Uncharacterized protein YerC (yerC) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 63% identity to psu:Psesu_1821)

Predicted SEED Role

"His repressor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (111 amino acids)

>OKGIIK_04940 TrpR , YerC/YecD (Rhodanobacter sp. FW510-T8)
MKRRSRDPETPAESAEQSLCEALLSLKNVEEMAAFLGDLCTPAELEVLVDRWRVVPFLLD
GVPYREIHEHTAVSITTIGRVARYLNQGNGGYLAAAARAARRQAQTTRKKA