Protein Info for OKGIIK_04720 in Rhodanobacter sp. FW510-T8

Annotation: DUF979 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 322 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 30 to 49 (20 residues), see Phobius details amino acids 55 to 73 (19 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 130 to 152 (23 residues), see Phobius details amino acids 172 to 200 (29 residues), see Phobius details amino acids 211 to 239 (29 residues), see Phobius details amino acids 258 to 279 (22 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details PF06166: DUF979" amino acids 5 to 321 (317 residues), 316.9 bits, see alignment E=7.3e-99

Best Hits

KEGG orthology group: None (inferred from 42% identity to esa:ESA_02630)

Predicted SEED Role

"FIG001614: Membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (322 amino acids)

>OKGIIK_04720 DUF979 domain-containing protein (Rhodanobacter sp. FW510-T8)
MLRIEYVYWLIAAFLLYCGLRDLRERRAWHAAFWLVLGVLFGAGDYVLAQQAAGHALPAQ
LAGIGVIVLALLAPRLHRHAHAEEGSAAQRLQSAIRLGHKLLVPALLIPLVTLLVALFGG
YLAFAGRHLFATAQMTLTGLALACVIALFAAARVARAPLSAGLAEGRRLLDAIGWAALLP
LLLAALGEVFTQSGVGAAIAALATSWLPTGSALACLVTFALGMVLFTVIMGNAFAAFPVM
MAGIGLPLLIRQHGADPAILGSMGMLCGYCGTLLTPMAADYNLVPAALLELRNPYGVIRA
QLWSAWWILAATFVTMWLLAFR