Protein Info for OKGIIK_03385 in Rhodanobacter sp. FW510-T8

Name: hflC
Annotation: SPFH domain / Band 7 family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 288 transmembrane" amino acids 7 to 32 (26 residues), see Phobius details amino acids 38 to 59 (22 residues), see Phobius details PF01145: Band_7" amino acids 61 to 232 (172 residues), 90.7 bits, see alignment E=6.1e-30

Best Hits

KEGG orthology group: None (inferred from 63% identity to psu:Psesu_2135)

Predicted SEED Role

"Membrane protease family protein BA0301"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (288 amino acids)

>OKGIIK_03385 SPFH domain / Band 7 family (Rhodanobacter sp. FW510-T8)
MNERNGFSVAGIPFVGLCIVLAAIGIALVLPAAQGQPAASAIAGVILLAIDGFMLKGFFQ
VAPNEGQVLQLFGKYAGTVRHEGLRWTNPFCSRRRISLRVRNFESGKLKVNDNDGNPIEI
GAVVVWQVLDTAEAVFCVDDYENFVHIQSESALRQMAQSYPYDAHDDGKPSLRSHGDVIN
SHLRDEIQTRLGKAGVQVVEARISHLAYAQEIAQAMLQRQQAGAIIAARTKIVEGAVSMV
EMALDQLSQRGVVNLDEERKAAMVSNLLVVLCGERGSQPVLNTGTLYN