Protein Info for OKGIIK_02415 in Rhodanobacter sp. FW510-T8

Annotation: Glycosyl hydrolase family 39

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 518 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF01229: Glyco_hydro_39" amino acids 36 to 487 (452 residues), 361.2 bits, see alignment E=4.7e-112

Best Hits

KEGG orthology group: K01198, xylan 1,4-beta-xylosidase [EC: 3.2.1.37] (inferred from 60% identity to acm:AciX9_0177)

Predicted SEED Role

"Beta-xylosidase (EC 3.2.1.37)" in subsystem Xylose utilization (EC 3.2.1.37)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.37

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (518 amino acids)

>OKGIIK_02415 Glycosyl hydrolase family 39 (Rhodanobacter sp. FW510-T8)
MTLSAQLRNLALGVCAAALLLTGAASAAPPAAAATRLQVDANAKGTAFPHFWEQMLGSGR
ASLALRDDYRKNLDTVHQATGVGYIRFHGILDHDVGLVQRDAQGKISYNFSYIDQIYDGL
LEHGFKPFVELGFMPPELTSDPAALQEFWYHPNVAPPKDYAEWDAMIGALARHLVERYGI
DEVASWYFEVWNEPNIGFWAGRPAQATYFTLYDHTARALKAVSPRLRVGGPSTAQAAWAT
DFLAHTHKNNVPVDFVSTHVYGDDTADNVFHTSEKIPRADMVCRSVDKVHKEIAASPYPH
LPLIFSEYNASYANLPNVTDTVFMGPWLANTIRECAGKVEAMSYWSFSDVFEEQGIVRNP
FYGGFGLIAANRIAKPAFNAFAVLHKLGDQRLAADTDSALVTRRADGTVVIALWNYAPPV
GDTASYTPGKPAGAPKRFDIAVRHLPAAARATVWRVDETHGNAVAAFDRMGRPDSPSRAQ
IAQLRAAGALAAPETMDLRDGRLELDVPPQGLVVIELR