Protein Info for OKGIIK_02195 in Rhodanobacter sp. FW510-T8

Name: dinG
Annotation: helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 652 PF00270: DEAD" amino acids 39 to 91 (53 residues), 29.6 bits, see alignment 8.6e-11 PF13307: Helicase_C_2" amino acids 470 to 627 (158 residues), 145.8 bits, see alignment E=2e-46

Best Hits

Predicted SEED Role

"DinG family ATP-dependent helicase YoaA" in subsystem DNA repair, bacterial DinG and relatives

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (652 amino acids)

>OKGIIK_02195 helicase (Rhodanobacter sp. FW510-T8)
MNDFDDAGPDDVGALLGVDGPFARELPNFAPRAVQQAMARAVQQAIAGRDTLIAEAGTGT
GKTYAYLVPALLSGERVIISTGTKALQDQLYFRDLPKVRSVLGARLKTALLKGRANYLCL
YRLDQTVREGATFERAQAAQLATIRAWSARTRRGDRMELAEVPEESPLWPRVTSTPENCL
GVECPFFDDCHVVKARREALEADVVVVNHHLLFADLALKQEGFGEILPGAAAFILDEAHQ
IPELAGQFFSQSVSARQLSELAQDTLTECSGVTGAIGLLLEPVEALQDALRKLRLALEPL
PARGAFQLLEDRAGVRASLHDLRELLATLAELLASQAERSRGFANLHERAELFTGRLDRI
VESHGDHDVRWYETFPRGFALYATPLDLAVPMRGLRERTQAAWIHTSATLSVAGNFDHFA
RQLGLDDPQALSLDSPFDYAHQALCYLPPGLPDPNARDYTEQVIEAVLPVLHASNGRAFL
LFTSHRALRRAAELLQDKVPWPLFVQGTAPRPRLLEEFRASGHGVLLGAASFWEGVDVVG
EALSVVVIDKLPFAAPDDPVLTARLAALEQSGINPFMGWQVPSAAIALKQGAGRLIRDVH
DRGVLVLCDPRLTGKGYGKLFLASLPPMPRTRELADVQAFFDIAKTARAAAT