Protein Info for OKGIIK_01195 in Rhodanobacter sp. FW510-T8

Annotation: ABC transporter, ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 312 PF00005: ABC_tran" amino acids 34 to 78 (45 residues), 25.1 bits, see alignment 2.4e-09 PF14524: Wzt_C" amino acids 165 to 302 (138 residues), 132.2 bits, see alignment E=1.4e-42

Best Hits

Predicted SEED Role

"ATP binding component of ABC-transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (312 amino acids)

>OKGIIK_01195 ABC transporter, ATP-binding protein (Rhodanobacter sp. FW510-T8)
MGFSPDLSGRSNVHHTAGLMGFSRAEIDGAMLAIEEFAEIGEYFDEPVRTYSSGMQMRVA
FAVATAFRPDILIVDEALSVGDAYFQHKCFKRIREFREQGTSLLIVSHDSSAVQTLCDRA
LLLENGALVKDGDPAEVMDLYNALIAERENSTITISNHVSGRVQTVSGSGEASIESIALL
NAADESVEFVDVGQSVTLLVRVIVREDIPRLVLGYMIKDRLGQPVFGTNTHHTKQALENV
RAGQRIEFRISFPMNFGQGSYSVSTALVSTDTHLVNNYEWRDLALVFNVSNMSRPVFVGS
AWVPPQIEVGSP