Protein Info for OKGIIK_00980 in Rhodanobacter sp. FW510-T8

Annotation: Multidrug transporter AcrB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1087 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 356 to 375 (20 residues), see Phobius details amino acids 381 to 402 (22 residues), see Phobius details amino acids 408 to 428 (21 residues), see Phobius details amino acids 450 to 475 (26 residues), see Phobius details amino acids 487 to 509 (23 residues), see Phobius details amino acids 558 to 580 (23 residues), see Phobius details amino acids 916 to 933 (18 residues), see Phobius details amino acids 939 to 962 (24 residues), see Phobius details amino acids 970 to 992 (23 residues), see Phobius details amino acids 1012 to 1032 (21 residues), see Phobius details amino acids 1043 to 1066 (24 residues), see Phobius details PF00873: ACR_tran" amino acids 22 to 1064 (1043 residues), 517.5 bits, see alignment E=6.7e-159

Best Hits

KEGG orthology group: None (inferred from 59% identity to app:CAP2UW1_0228)

Predicted SEED Role

"Acriflavin resistance protein" in subsystem Multidrug Resistance Efflux Pumps

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1087 amino acids)

>OKGIIK_00980 Multidrug transporter AcrB (Rhodanobacter sp. FW510-T8)
MSGPRLGFSGRIARAFQDSPLTPILAIAALLLGLVAVMITPREEEPQIDVTMANVMVPFP
GADVRDVENLVAFPLEQKLAEIEGVKHVYSVSRPGMAVMTVEFQVGVPRQAAIVRLYNQV
FQNQGFVPPGLGVGPPLVRPMGIDDVPVMALTLWSDLPAQGPVQLAEVAHTLETELKRVP
GTRDVYTIGAPARAVVVELDAAKLAAYGMTPGDLSNALKAANAVSQAGDRVGGERDVPVT
AGRFLADAAEVSQLVIGLKNGQPVFLSDVATIRQGADLPDSYAWFGAPAGKAGPATGNAP
AVTIAVAKKPGTNAADITGAIRRRLDALQGVAIPAGVHVAVTRDYGQTATDKADKLIHKL
IFATLSVVLLVLLALSWRAAVVVGSAVIVTLALTLFASWAMGFTINRVSLFALIFSIGIL
VDDAIVVVENIHRHMALGGRTLREAIPEAVGEVGGPTILATFTVIAALLPMAFVSGLMGP
YMRPIPINASAGMLLSLAVALVVTPWLALRLLGHGHPAGEAATAAAHESAGGWLPRLFQR
VMTPFLHGDRAPRRRRRLFAVMGLLVLAAVGLVVVKAVVLKMLPFDNKSEFQVVVDMPEG
STLERTNRLLGELAQAVAEVPEVKDWQGYAGTAAPITFNGLVRQYYLRSGPIVGDLQVSL
VDKHERQRQSHAIALAVRPALAKIGARYGASVKVVEVPPGPPVLAPIVAEVYGPDYATVR
KVALGLERDFKANPDIVDVDTSVEAQAPRDVLVVDRARAARLGLDQAAIAQALRTALSGD
DASYLMDGHAKYAVPIRLRLGAGDQAAMSQLLALRVRARGGALVPLSEVVAVQPAQREQA
IWHKDLLPYATVTGDDAGATDSPLYGMFSLVGKLGHDKVAGQLLQQHFIAQPTDTTDASV
KWDGEWQITYETFRDMGLAYSAGLLLIYLLVVGQFRSYVVPLIIMAPIPLTVIGVMPGHA
LVGAQYTATSMIGMIALAGIIVRNSILLIDFINHALAAGQPLREAVIDAAAVRAKPIVLT
GVAAMIGGFFIIDDPIFQGLAVSLIFGILVSTALTLLVIPLLYYAWLQRRVGPDGRLSQA
PAAVVPG