Protein Info for OKGIIK_00765 in Rhodanobacter sp. FW510-T8

Annotation: Dihydroorotate dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 transmembrane" amino acids 34 to 52 (19 residues), see Phobius details amino acids 64 to 83 (20 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details amino acids 189 to 207 (19 residues), see Phobius details amino acids 228 to 246 (19 residues), see Phobius details amino acids 252 to 272 (21 residues), see Phobius details amino acids 284 to 303 (20 residues), see Phobius details amino acids 331 to 354 (24 residues), see Phobius details amino acids 366 to 384 (19 residues), see Phobius details amino acids 396 to 418 (23 residues), see Phobius details amino acids 429 to 452 (24 residues), see Phobius details amino acids 467 to 491 (25 residues), see Phobius details TIGR00924: amino acid/peptide transporter (Peptide:H+ symporter)" amino acids 14 to 495 (482 residues), 350.1 bits, see alignment E=1.2e-108 PF07690: MFS_1" amino acids 33 to 375 (343 residues), 54.8 bits, see alignment E=7.6e-19 PF00854: PTR2" amino acids 92 to 453 (362 residues), 205.4 bits, see alignment E=1.4e-64

Best Hits

KEGG orthology group: K03305, proton-dependent oligopeptide transporter, POT family (inferred from 64% identity to xfm:Xfasm12_1074)

Predicted SEED Role

"Di-/tripeptide transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>OKGIIK_00765 Dihydroorotate dehydrogenase (Rhodanobacter sp. FW510-T8)
MSQTIEAGAPGYPQLLGHPRPLWMLFMTEFWERFAFYSVSWALALYIVAQFFHGDPSGQG
WASGIYGAWVALIYAMGIFGGYIADRVIGYQRSILIGAAVMALGLFAIMLPDKRLFLVGL
SLVIVGNGLFKPNISTMVGQLYARGDERRDRGFTLFYMGINGGALLAPLFTGWLAGYLTD
TPLEQNYKAVFGAAGVGMLLSLLWFWIGRRQLGAVGRPAPGHASRTRVAWVLLGVLLSVP
LVYLLLAYVGAIYLSWVLGVLFAAVAAMLLVEGVRHDRVQVERVIAMLIIFAFNMLFWMF
YFQLGTSFNFLAQNLVDRRMFGGWEFPVGWFQSVSPLAIILLAPLVTLVWAFLAARRREP
SIPRKFGLGLVFNGLGFAGLMYGLSHLLDGRGLIPFWPLALCYVLQTVGELCLSPIGLSM
VTKLAPPRLVGLAMGGWFLSLAVGGNLSGLLAGRISGDSGMTAVSALAGFTFSFWLLAGA
GVLLLLIAPLINRLMHGVR