Protein Info for OKGIIK_00515 in Rhodanobacter sp. FW510-T8

Annotation: Phage tail protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 536 PF04984: Phage_sheath_1" amino acids 239 to 417 (179 residues), 32.8 bits, see alignment E=6.3e-12 PF17482: Phage_sheath_1C" amino acids 426 to 528 (103 residues), 35.3 bits, see alignment E=9.8e-13

Best Hits

KEGG orthology group: K06907, (no description) (inferred from 64% identity to nde:NIDE2219)

Predicted SEED Role

"Phage tail sheath protein FI"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (536 amino acids)

>OKGIIK_00515 Phage tail protein (Rhodanobacter sp. FW510-T8)
MPSALTYPGVYIEEIPSGVRTITGVATSIAAFVGRAARGPTDADAESPVTINSYGDFERN
FGKLDPTYPMGYAVRDFYLNGGAQAVIVRLYKANGGKPAKAAIKIANLPLEAASAGSWGN
QLRARVDYGVSADIAARFGLATTDLFNLTVRDVASGAQESFLNLTVKESPRRADRVLKAG
SSLARVAASLTLPATTVPAAHLDPDPGKTVWEQDKSSTGVAPADQAADSAVLDDAAYLGS
PDAKTGLYALKKADLFNLLCIPPDLRGGNTAVTVYQTALAFCVDRRALLIVDAPAEWSSA
GAITQSSNAALTALGLNGDAARNAALYFPRVIESDPVRQGQLDSFVPCGIVAGVMARTDT
QRGVWKAPAGIDAALNGVQGLAATLNDAENGMLNPLGVNCLRSFPLVGPVLWGSRTLRGA
DLLADEYKYVPVRRLALYIEESLFRGTQWVVFEPNDEPLWSQIRLNVGAFMQNLFRQGAF
QGKTPNDAYFVKCDKETTTQNDINLGIVNIVVGFAPLKPAEFVVIQLQQMAGQIQS