Protein Info for OKGIIK_00340 in Rhodanobacter sp. FW510-T8

Annotation: Histidine kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 transmembrane" amino acids 10 to 31 (22 residues), see Phobius details amino acids 149 to 173 (25 residues), see Phobius details PF00672: HAMP" amino acids 173 to 224 (52 residues), 40.2 bits, see alignment 5.4e-14 PF00512: HisKA" amino acids 230 to 294 (65 residues), 42.7 bits, see alignment E=7.3e-15 PF02518: HATPase_c" amino acids 342 to 450 (109 residues), 82.1 bits, see alignment E=5.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>OKGIIK_00340 Histidine kinase (Rhodanobacter sp. FW510-T8)
MKSIGARITFWYALSATLTVASLFIAGYQLLQNYVIRDLDLLNATEFQQIKARLGSDYPS
LNREVIEERIRQTTEYASVLFYISIDSPSRGNLFRSKNLAGNPLPDVPKRHVFEGVMPGV
GELRIAEFVLPPFDVSIGTPMGQVRRTMVAYTEVCLALLIGMLLASIAIGLGLSRVMLRP
VRLIGETANRIRSDNLTERIAVTGVEDEISGLATLLNQMFDRLESSFNQVRQFAAEVSHE
LKTPLSLVRLHAEKLLVEGNLGHSHEEAVLVQLEELARVNQMVDELLFLSRAEAQGIRMD
LVVQDPHRFLRSFEQDVQALTEHRGCRFSCTHYGEGLVAFEERWLRQVVLNILTNALRMS
PPGGLITLRSELEGHIWRVSIEDEGPGLTDDQYERAFERFVRFNQVNTEDKGSGLGLAIC
RSIIQLHNGRIHAECGTGGAGLRVVFEIPAIHHDTVDKVHAAF