Protein Info for OKFHMN_23855 in Escherichia coli ECRC101

Annotation: Tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 812 PF06791: TMP_2" amino acids 65 to 126 (62 residues), 80.7 bits, see alignment 1.3e-26 amino acids 126 to 235 (110 residues), 53 bits, see alignment E=4e-18 TIGR01541: phage tail tape measure protein, lambda family" amino acids 431 to 772 (342 residues), 352.6 bits, see alignment E=1e-109 PF09718: Tape_meas_lam_C" amino acids 586 to 660 (75 residues), 72.5 bits, see alignment E=2.4e-24

Best Hits

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (812 amino acids)

>OKFHMN_23855 Tape measure protein (Escherichia coli ECRC101)
MAGNFADLTAVLTLDSARFSEEAARVKKELGETSALADLMSGKVSQSFRKQADAAEQSLS
RQALAAQKAGISVGQYKAAMRTLPAQFTDIVTQLAGGQNPFLIMLQQGGQISDSFGGPLS
LLTLLKEELLGIRDASESSEESLSDTANALAENARNAGELGRFMSVARLAESGKYTAGQL
RIMGETSQRWLQTVGDDAGKVEKAFEGIAADPVKALVSLNQQYNFLSVSQLRHIDELERT
KGKQVAVTEAMSLFADVMNARLEQLDKAATPVEKIWDDVKTWTSDAWAWIGDHTLGALSL
ITDVVAGTVEQVKLLLVQGDLALAEFIQSAWETTKNVPGVGALFGELAEENRVFIEKTKR
DELALRKSIAERDARIRQGEMGYINRSRATGVSKGPGQQEAVSRLAEELTGKKHTSPKTR
SAGEREEEQAREALLALEAELRTLEKHSGANEKISRQRRDLWKAESQYAVLKEAATKRQL
SEQEKSLLAHKDETLEYKRQLAELGDKVEYQKRLNELAQQAVRFEEQQSAKQAAISAKAR
GLTDRQAQRESEAQRLRDVYGDNPAALAKATSALKNTRSAEEQLRGSWMAGLKSGWGEWA
ESATDSFSQVKSAATQTFDGIAQNMAAMLTGAEADWRGFTRSVLSMMTEILLKQAMVGIV
GRIGSAIGGAFGGGASASSGTAIQAAAANFHFAIGGFTGTGGKYEPAGIVHRGEFVFTKE
ATSRIGVGNLYRLMRGYAEGGYVGGAGSPAQMRRAEGINFNQNNHVVIQNDGTNGQAGPQ
LMKAVYDMARKGAQDELRLQLRDGGMLSGSGR