Protein Info for OKFHMN_19100 in Escherichia coli ECRC101

Name: tnp-IS3
Annotation: IS3 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 295 transmembrane" amino acids 81 to 99 (19 residues), see Phobius details amino acids 142 to 161 (20 residues), see Phobius details PF13276: HTH_21" amino acids 46 to 103 (58 residues), 64.8 bits, see alignment E=1.4e-21 PF00665: rve" amino acids 126 to 222 (97 residues), 91.5 bits, see alignment E=7.7e-30 PF13683: rve_3" amino acids 217 to 277 (61 residues), 42.4 bits, see alignment E=9e-15 PF13333: rve_2" amino acids 230 to 277 (48 residues), 26.2 bits, see alignment 1.4e-09

Best Hits

Swiss-Prot: 97% identical to T629_SHISO: Transposase for insertion sequence element IS629 from Shigella sonnei

KEGG orthology group: None (inferred from 100% identity to eoi:ECO111_2625)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (295 amino acids)

>OKFHMN_19100 IS3 family transposase (Escherichia coli ECRC101)
MPLLDKLREQYGVGPVCSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDE
NHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGDRVN
RQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQA
LWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESINGLYKAEV
IHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAEAEKAYYASIGNDDLAA