Protein Info for OKFHMN_17005 in Escherichia coli ECRC100

Name: rpnA
Annotation: recombination-promoting nuclease RpnA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 292 PF04754: Transposase_31" amino acids 8 to 209 (202 residues), 308.4 bits, see alignment E=1.1e-96 TIGR01784: conserved hypothetical protein" amino acids 9 to 288 (280 residues), 159.1 bits, see alignment E=9.7e-51

Best Hits

Swiss-Prot: 99% identical to RPNA_ECOLI: Recombination-promoting nuclease RpnA (rpnA) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eco:b3411)

MetaCyc: 99% identical to recombination-promoting nuclease RpnA (Escherichia coli K-12 substr. MG1655)
RXN0-7100

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (292 amino acids)

>OKFHMN_17005 recombination-promoting nuclease RpnA (Escherichia coli ECRC100)
MSKKQSSTPHDALFKLFLRQPETARDFLAFHLPAPIHALCDMKTLKLESSSFIDDDLRES
YSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYTIAAMQNHLDAGYKTLPMVVPL
LFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDITVMPDDEIMQHRRMTLLELIQ
KHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQTGDAVRFNDFIDGVAERSPKHK
ESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADIMRFTGLSEEELAAASQ