Protein Info for OKFHMN_15080 in Escherichia coli ECRC101

Name: yidE
Annotation: putative transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 29 to 49 (21 residues), see Phobius details amino acids 65 to 86 (22 residues), see Phobius details amino acids 93 to 114 (22 residues), see Phobius details amino acids 159 to 181 (23 residues), see Phobius details amino acids 372 to 391 (20 residues), see Phobius details amino acids 398 to 398 (1 residues), see Phobius details amino acids 400 to 420 (21 residues), see Phobius details amino acids 423 to 424 (2 residues), see Phobius details amino acids 432 to 451 (20 residues), see Phobius details amino acids 466 to 485 (20 residues), see Phobius details amino acids 493 to 513 (21 residues), see Phobius details amino acids 528 to 551 (24 residues), see Phobius details PF06826: Asp-Al_Ex" amino acids 11 to 179 (169 residues), 141.1 bits, see alignment E=3.1e-45 amino acids 374 to 546 (173 residues), 161.6 bits, see alignment E=1.5e-51 TIGR01625: AspT/YidE/YbjL antiporter duplication domain" amino acids 16 to 166 (151 residues), 129.7 bits, see alignment E=4e-42 amino acids 379 to 533 (155 residues), 174.6 bits, see alignment E=6e-56 PF02080: TrkA_C" amino acids 212 to 271 (60 residues), 30.1 bits, see alignment 3.6e-11 amino acids 291 to 360 (70 residues), 44 bits, see alignment E=1.6e-15

Best Hits

Swiss-Prot: 100% identical to YIDE_SHIFL: Putative transport protein YidE (yidE) from Shigella flexneri

KEGG orthology group: K07085, putative transport protein (inferred from 100% identity to eco:b3685)

Predicted SEED Role

"Mediator of hyperadherence YidE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (553 amino acids)

>OKFHMN_15080 putative transporter (Escherichia coli ECRC101)
MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVGHFVSQAGMTLSSDMLH
VIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVIIGGLVTAILHKLFDIPLP
VVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSYAMAYPFGICGILFTMWMLRV
IFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHDLAIKDVPILNGDKIICSRLKRE
ETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQEVDTSLSTKGTDLRVERVVVTNEN
VLGKRIRDLHFKERYDVVISRLNRAGVELVASGDISLQFGDILNLVGRPSAIDAVANVLG
NAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVPGFPAALKLGLAGGPLIMALILGRIGSIG
KLYWFMPPSANLALRELGIVLFLSVVGLKSGGDFVNTLVNGEGLSWIGYGALITAVPLIT
VGILARMLAKMNYLTMCGMLAGSMTDPPALAFANNLHPTSGAAALSYATVYPLVMFLRII
TPQLLAVLFWSIG