Protein Info for OKFHMN_10375 in Escherichia coli ECRC101

Name: fimD
Annotation: outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 866 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF13954: PapC_N" amino acids 36 to 183 (148 residues), 125.4 bits, see alignment E=2.7e-40 PF00577: Usher" amino acids 198 to 769 (572 residues), 518.1 bits, see alignment E=5.2e-159 PF13953: PapC_C" amino acids 779 to 842 (64 residues), 55.1 bits, see alignment 8.2e-19

Best Hits

Swiss-Prot: 61% identical to HTRE_ECOLI: Outer membrane usher protein HtrE (htrE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ecs:ECs0143)

Predicted SEED Role

"Outer membrane usher protein HtrE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (866 amino acids)

>OKFHMN_10375 outer membrane usher protein (Escherichia coli ECRC101)
LYQFTHQKSRIPKKTLLAACCALFYSSNGAAADTVEYDSSFLMGTGASTIDVKRYAQGNP
TPPGLYNVRVFVNGQATSSLEIPFVDIGENSAAACLTHKNLAQLHIKQPEQPVTLLAREG
EEEDCLDLAKSYEKADVCFDGSDQFLDLTIPQAYVLKSYGGYVDPSLWESGINAATLAYT
LNAYHTSSDNDNSDSVYGAFNSGINLGAWHFRARGNYNWTTDNGSDFDFQDRYLQRDIPA
IRSQIIMGDAYTTGETFDSVNVRGVRLYSDSRMLPSALASYAPTIRGVANSNAKVTVTQS
GYKIYETTVPPGEFVIDDISPSGFGSELVVTIEEADGSKRTFTQPFSSVVQMQRPGVGRW
DFSAGKVIDDSLRSEPNMGQASYYYGLNNLFTGYTGIQFTDNNYLAGLLGVGINTSIGAF
AVDVTHSRAEIPDDKTYQGQSYRVTWNKLFQDTGTSFNLAAYRYSTQDYLGLHDALVLID
DAKHLSADEDKNTMQTYSRMKNQFTVSINQPLNIAYEDYGSLFISGSWTYYWAANNSRTE
YNVGYSKSVSWGSFSVNLQRSWNEDGEKDDAMYVSVSVPIENILGGKRKSSGFRNLNTQL
NTDFDGSHQLNVNSSGNTENNLVNYSVNAGYSLDKNAGDLASVGGYLNYESGLGGISASA
SATSDNSQQYSISTDGGFVLHSGGLTFTNNSFSSNDTLVLINALGAKGARINNSNNEIDR
WGYAVTSSVSPYRENRVGLNIETLENDVELKSTSATTVPRSGSVVLTRFETDEGRSAVLN
ITAANGKSIPFAAEVYQGEVMIGSMGQGGQAFVRGINDSGELIVRWYENNQTIDCKLHYQ
FPAQPQTQGSTNTLLLNNLTCQVANH