Protein Info for OKFHMN_09810 in Escherichia coli ECRC100

Name: rhsA
Annotation: RHS repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 586 PF05593: RHS_repeat" amino acids 49 to 82 (34 residues), 24.4 bits, see alignment (E = 3.1e-09) PF03527: RHS" amino acids 334 to 369 (36 residues), 59.3 bits, see alignment 2.5e-20 TIGR03696: RHS repeat-associated core domain" amino acids 360 to 437 (78 residues), 86.8 bits, see alignment E=1.1e-28

Best Hits

Swiss-Prot: 89% identical to RHSE_ECOLI: Putative protein RhsE (rhsE) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ecs:ECs0242)

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (586 amino acids)

>OKFHMN_09810 RHS repeat protein (Escherichia coli ECRC100)
LPWLHRETARSFGGAGSTAGYEQVTAYTLTGQLQSRHLNLPQLDCDYDWNDNGQLIRISG
PQESREYRYSDTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIA
EDAHYVYRYDEYGRLTEKTDRIPEGVIRMHDERTHHYHYDNQHRLVFYTRIQYGEPLVES
RYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTVQTGTTRIQTVYRP
GSFTPLIRIETENGEREKAQRRSLAEKLQQEGSEDGHGVVFPAELVRMLDRLEEEIRADR
VSSESRAWLAQCGLTVEQLEKQVEPEYTPARTLHLYHCDHRGLPLALISEDGNTAWSAEY
DEWGNQLNEENPHHLHQPYRLPGQQHDEESGLYYNRHRYYDPLQGRYITPDPIGLRGGWN
MYQYPLNPIQVIDPMGLDAIENMTSGGLIYAVSGVPGLIVANSITNSAYQFGYDMDAIVG
GAHNGAADAMRYCYLMCRMTKTFGSTIADVIGKNHEAAGDRQGQPAKERIMDLKNNTVGI
ACGDFSAKCSDACIEKYNIGQLFGLDGIKADNPIKAKQGSSDASNY